Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 SNORA36C-201ENST00000384289 132 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
HOXA3O43365 U3.30-201ENST00000391308 210 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AL357515.1-201ENST00000402967 542 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 RNU4-25P-201ENST00000410569 230 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXA3O43365 AC080125.1-201ENST00000414888 684 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AL590632.1-201ENST00000424289 371 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 HMGB1P27-201ENST00000431429 603 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AC091390.1-201ENST00000433904 331 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AC016831.4-201ENST00000438302 307 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA3O43365 RPS5P7-201ENST00000456664 608 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 MIR2053-201ENST00000459295 91 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXA3O43365 AC090686.1-201ENST00000481577 749 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 VN1R104P-201ENST00000505115 1009 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AL359273.1-203ENST00000506295 602 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA3O43365 AC097473.1-201ENST00000508142 408 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA3O43365 AC116337.1-201ENST00000509680 687 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 RNU4ATAC7P-201ENST00000516280 125 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 RNU6-1016P-201ENST00000516689 94 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 RNA5SP392-201ENST00000516905 112 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AC105031.1-201ENST00000518550 476 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AC109466.1-204ENST00000519570 717 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA3O43365 ERHP1-201ENST00000523006 310 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA3O43365 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA3O43365 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC3.89□□□□□ -1.79
HOXA3O43365 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA3O43365 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA3O43365 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXA3O43365 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC3.89□□□□□ -1.79
HOXA3O43365 MIR4284-201ENST00000578924 81 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 MIR3671-201ENST00000580455 88 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 PRPF19P1-201ENST00000584766 898 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AC015967.1-201ENST00000619893 476 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 MIR6758-201ENST00000620653 63 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC3.89□□□□□ -1.79
HOXA3O43365 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC3.89□□□□□ -1.79
HOXA3O43365 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
HOXA3O43365 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXA3O43365 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC3.89□□□□□ -1.79
HOXA3O43365 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
HOXA3O43365 AL672167.1-204ENST00000641875 3017 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 KPNA2P1-201ENST00000458289 1591 ntBASIC3.89□□□□□ -1.79
HOXA3O43365 AC126323.6-202ENST00000568092 3511 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
HOXA3O43365 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA3O43365 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA3O43365 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA3O43365 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA3O43365 OR5P1P-201ENST00000299512 925 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 TNP2-201ENST00000312693 626 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA3O43365 Y_RNA.144-201ENST00000363521 113 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA3O43365 UBBP2-201ENST00000376781 231 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 U3.32-201ENST00000408116 212 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA3O43365 AC113618.1-201ENST00000416747 285 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AC010967.2-201ENST00000418451 333 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA3O43365 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.88□□□□□ -1.79
HOXA3O43365 RPL7P37-201ENST00000425095 738 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 MTCO1P39-201ENST00000426148 480 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA3O43365 ARL2BPP10-201ENST00000446487 531 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AC008264.1-201ENST00000447612 367 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AC000111.2-201ENST00000448200 210 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA3O43365 RPL21P41-201ENST00000459863 264 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 RPL37P6-201ENST00000460682 294 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AL591473.1-201ENST00000464297 313 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 RN7SL385P-201ENST00000468873 276 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXA3O43365 RNU6-976P-201ENST00000516086 111 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 RNU6-1046P-201ENST00000516538 107 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AC090151.1-201ENST00000520784 730 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA3O43365 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA3O43365 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA3O43365 AC026371.1-201ENST00000551867 419 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AL049839.1-201ENST00000556151 657 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AC040958.1-201ENST00000561102 201 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 RPL23AP87-202ENST00000573039 466 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 MIR5096-201ENST00000583713 70 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 SNORD84-203ENST00000584275 78 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AC022726.1-201ENST00000587475 207 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC3.88□□□□□ -1.79
HOXA3O43365 RNA5SP108-201ENST00000605921 117 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 PISRT1.1-201ENST00000616930 107 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC3.88□□□□□ -1.79
HOXA3O43365 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.88□□□□□ -1.79
HOXA3O43365 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
HOXA3O43365 AC100778.3-201ENST00000580060 1750 ntBASIC3.88□□□□□ -1.79
HOXA3O43365 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA3O43365 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
HOXA3O43365 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
HOXA3O43365 AC074029.4-201ENST00000624796 1859 ntBASIC3.88□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 126.1 ms