Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 RN7SKP167-201ENST00000411047 285 ntBASIC4.42□□□□□ -1.7
CBX4O00257 RNA5SP311-201ENST00000411290 116 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC4.42□□□□□ -1.7
CBX4O00257 RWDD4P2-201ENST00000426392 563 ntBASIC4.42□□□□□ -1.7
CBX4O00257 HMGB1P27-201ENST00000431429 603 ntBASIC4.42□□□□□ -1.7
CBX4O00257 RPL21P112-201ENST00000434403 463 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC4.42□□□□□ -1.7
CBX4O00257 IFNA20P-201ENST00000436840 528 ntBASIC4.42□□□□□ -1.7
CBX4O00257 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.42□□□□□ -1.7
CBX4O00257 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
CBX4O00257 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC4.42□□□□□ -1.7
CBX4O00257 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.42□□□□□ -1.7
CBX4O00257 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC4.42□□□□□ -1.7
CBX4O00257 AMD1P1-201ENST00000457220 922 ntBASIC4.42□□□□□ -1.7
CBX4O00257 HSPE1P6-201ENST00000479457 291 ntBASIC4.42□□□□□ -1.7
CBX4O00257 RN7SL817P-201ENST00000480777 288 ntBASIC4.42□□□□□ -1.7
CBX4O00257 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.42□□□□□ -1.7
CBX4O00257 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.42□□□□□ -1.7
CBX4O00257 RBBP4P6-201ENST00000508098 202 ntBASIC4.42□□□□□ -1.7
CBX4O00257 PARP4P3-201ENST00000510265 317 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.42□□□□□ -1.7
CBX4O00257 RNU6-123P-201ENST00000516163 102 ntBASIC4.42□□□□□ -1.7
CBX4O00257 RNA5SP315-201ENST00000516340 116 ntBASIC4.42□□□□□ -1.7
CBX4O00257 Y_RNA.675-201ENST00000516389 149 ntBASIC4.42□□□□□ -1.7
CBX4O00257 RNU7-30P-201ENST00000516835 62 ntBASIC4.42□□□□□ -1.7
CBX4O00257 RN7SKP60-201ENST00000516985 239 ntBASIC4.42□□□□□ -1.7
CBX4O00257 RNA5SP312-201ENST00000517068 116 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC4.42□□□□□ -1.7
CBX4O00257 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.42□□□□□ -1.7
CBX4O00257 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.42□□□□□ -1.7
CBX4O00257 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.42□□□□□ -1.7
CBX4O00257 RPS3AP23-202ENST00000574601 686 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.42□□□□□ -1.7
CBX4O00257 AC067852.3-201ENST00000589177 561 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AC243960.4-201ENST00000600532 288 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AL138889.2-201ENST00000603883 242 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AL670379.4-201ENST00000605279 254 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AC128687.2-201ENST00000609657 566 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AL359547.2-201ENST00000615810 418 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC4.42□□□□□ -1.7
CBX4O00257 AL023881.1-201ENST00000621088 301 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AL360181.4-201ENST00000621752 134 ntBASIC4.42□□□□□ -1.7
CBX4O00257 AC112487.2-201ENST00000637950 304 ntBASIC4.42□□□□□ -1.7
CBX4O00257 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC4.42□□□□□ -1.7
CBX4O00257 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC4.42□□□□□ -1.7
CBX4O00257 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.42□□□□□ -1.7
CBX4O00257 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.42□□□□□ -1.7
CBX4O00257 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.42□□□□□ -1.7
CBX4O00257 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.41□□□□□ -1.7
CBX4O00257 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CBX4O00257 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CBX4O00257 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CBX4O00257 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
CBX4O00257 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CBX4O00257 PRO1804-201ENST00000623780 2050 ntBASIC4.41□□□□□ -1.7
CBX4O00257 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
CBX4O00257 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
CBX4O00257 RNU4-73P-201ENST00000363164 141 ntBASIC4.41□□□□□ -1.7
CBX4O00257 RNU6-116P-201ENST00000384042 109 ntBASIC4.41□□□□□ -1.7
CBX4O00257 SNORA36C-201ENST00000384289 132 ntBASIC4.41□□□□□ -1.7
CBX4O00257 RNU1-13P-201ENST00000384499 162 ntBASIC4.41□□□□□ -1.7
CBX4O00257 RPS26P8-201ENST00000393490 348 ntBASIC4.41□□□□□ -1.7
CBX4O00257 RNA5SP111-201ENST00000411386 101 ntBASIC4.41□□□□□ -1.7
CBX4O00257 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC4.41□□□□□ -1.7
CBX4O00257 MTND3P8-201ENST00000412909 339 ntBASIC4.41□□□□□ -1.7
CBX4O00257 AC007390.1-201ENST00000415722 356 ntBASIC4.41□□□□□ -1.7
CBX4O00257 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.41□□□□□ -1.7
CBX4O00257 NCOR1P3-201ENST00000420479 303 ntBASIC4.41□□□□□ -1.7
CBX4O00257 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC4.41□□□□□ -1.7
CBX4O00257 PDSS1P1-201ENST00000422953 1114 ntBASIC4.41□□□□□ -1.7
CBX4O00257 TAAR7P-201ENST00000436141 242 ntBASIC4.41□□□□□ -1.7
CBX4O00257 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.41□□□□□ -1.7
CBX4O00257 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CBX4O00257 AL162388.1-201ENST00000450912 352 ntBASIC4.41□□□□□ -1.7
CBX4O00257 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC4.41□□□□□ -1.7
CBX4O00257 HMGB3P30-201ENST00000457863 606 ntBASIC4.41□□□□□ -1.7
CBX4O00257 snoU13.24-201ENST00000458998 104 ntBASIC4.41□□□□□ -1.7
CBX4O00257 UQCRHP4-201ENST00000471686 272 ntBASIC4.41□□□□□ -1.7
CBX4O00257 RPL21P129-201ENST00000491732 478 ntBASIC4.41□□□□□ -1.7
CBX4O00257 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.41□□□□□ -1.7
CBX4O00257 AC093297.2-204ENST00000508945 295 ntTSL 3 BASIC4.41□□□□□ -1.7
CBX4O00257 AC021146.3-201ENST00000511911 260 ntBASIC4.41□□□□□ -1.7
CBX4O00257 Y_RNA.665-201ENST00000516177 98 ntBASIC4.41□□□□□ -1.7
CBX4O00257 RN7SKP256-201ENST00000517201 314 ntBASIC4.41□□□□□ -1.7
CBX4O00257 IGKV2D-23-201ENST00000518179 286 ntBASIC4.41□□□□□ -1.7
CBX4O00257 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.41□□□□□ -1.7
CBX4O00257 RPL7P20-201ENST00000520308 745 ntBASIC4.41□□□□□ -1.7
CBX4O00257 AC090151.1-201ENST00000520784 730 ntBASIC4.41□□□□□ -1.7
CBX4O00257 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC4.41□□□□□ -1.7
CBX4O00257 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
CBX4O00257 TVP23BP1-201ENST00000557500 617 ntBASIC4.41□□□□□ -1.7
CBX4O00257 RPL23AP97-201ENST00000568955 471 ntBASIC4.41□□□□□ -1.7
CBX4O00257 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC4.41□□□□□ -1.7
CBX4O00257 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.41□□□□□ -1.7
CBX4O00257 AC007619.2-201ENST00000605743 379 ntBASIC4.41□□□□□ -1.7
CBX4O00257 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.41□□□□□ -1.7
CBX4O00257 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.41□□□□□ -1.7
CBX4O00257 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
CBX4O00257 SDAD1P2-201ENST00000441308 2028 ntBASIC4.41□□□□□ -1.7
CBX4O00257 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 129.2 ms