Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RPL21P2-201ENST00000440049 481 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 UQCRHP3-201ENST00000451503 251 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AL160287.1-201ENST00000455612 432 ntTSL 3 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RPL21P39-201ENST00000463605 483 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RPL21P93-201ENST00000480465 489 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RPL30P14-201ENST00000482744 348 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC233702.1-201ENST00000482905 502 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC087190.1-201ENST00000484462 480 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC093591.1-201ENST00000491435 481 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RPL21P16-201ENST00000495531 483 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 LTV1P1-201ENST00000510683 1237 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RNU1-143P-201ENST00000516296 146 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 NAP1L1P1-201ENST00000524793 1063 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 ANKRD36BP2-206ENST00000575193 1245 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 MTATP6P24-201ENST00000576835 677 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC060771.1-201ENST00000582031 164 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 UBE2L4-201ENST00000587688 464 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC007001.1-201ENST00000590912 670 ntTSL 5 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 VN1R90P-201ENST00000595717 726 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 BNIP3P23-201ENST00000599655 511 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AF131215.7-201ENST00000602443 707 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AP000811.1-201ENST00000603803 651 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AL357094.1-201ENST00000603845 844 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 U1.23-201ENST00000610293 146 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RDM1-219ENST00000615378 542 ntTSL 3 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 RNU1-68P-201ENST00000615382 146 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AL138880.2-201ENST00000616214 239 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 U1.39-201ENST00000621562 146 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AL158801.5-201ENST00000623123 465 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 AC099063.3-201ENST00000642066 185 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 Z83843.1-201ENST00000604070 3685 ntBASIC2.97□□□□□ -1.93
DDX28Q9NUL7 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
DDX28Q9NUL7 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
DDX28Q9NUL7 MTND5P33-201ENST00000571250 1450 ntBASIC2.96□□□□□ -1.93
DDX28Q9NUL7 AL365361.1-201ENST00000566942 3481 ntBASIC2.96□□□□□ -1.93
DDX28Q9NUL7 LINC02510-201ENST00000509798 1576 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 GABRG2-229ENST00000641017 3628 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 RNA5SP267-201ENST00000364893 126 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 ESD-201ENST00000378697 1079 ntTSL 5 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 RNU6-1027P-201ENST00000383998 107 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 RNU6-769P-201ENST00000384407 104 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 MIR514A1-201ENST00000385133 98 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 SNORD17-201ENST00000390930 237 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 RNA5SP38-201ENST00000410750 119 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 HMGB1P11-201ENST00000413899 637 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC008850.1-201ENST00000427546 362 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AL390023.1-201ENST00000428836 262 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AL591475.1-201ENST00000429060 489 ntTSL 2 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC097713.2-201ENST00000430199 356 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 OR6K1P-201ENST00000456766 971 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AP1S2P1-201ENST00000457344 379 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 BCL2L15-204ENST00000471267 267 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 HSPD1P15-201ENST00000505573 1122 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 FCF1P8-201ENST00000510322 597 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC113385.1-201ENST00000511468 563 ntTSL 4 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC104211.1-202ENST00000521307 866 ntTSL 3 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC018714.1-201ENST00000605028 208 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC093838.1-201ENST00000613014 469 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC090132.2-201ENST00000615881 347 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AL355365.1-201ENST00000616480 294 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 SNORD39.4-201ENST00000620099 78 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 ABBA01000935.2-201ENST00000637477 838 ntBASIC2.96□□□□□ -1.94
DDX28Q9NUL7 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.96□□□□□ -1.94
DDX28Q9NUL7 AC091564.4-201ENST00000533934 2194 ntBASIC2.95□□□□□ -1.94
DDX28Q9NUL7 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 98.3 ms