Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 USP8P1-201ENST00000494673 3183 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.07□□□□□ -1.76
COL4A3Q01955 AC130650.2-201ENST00000618736 2403 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A3Q01955 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
COL4A3Q01955 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A3Q01955 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC4.07□□□□□ -1.76
COL4A3Q01955 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
COL4A3Q01955 MTND5P1-201ENST00000445440 1375 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 RNU6-97P-201ENST00000363387 104 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 Y_RNA.197-201ENST00000364004 102 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A3Q01955 RNU6-639P-201ENST00000384074 107 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 RNU6-38P-201ENST00000384085 107 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 SNORD116-29-201ENST00000384516 83 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 MIR454-201ENST00000390180 115 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AL024474.1-201ENST00000404655 591 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 RNU6-193P-201ENST00000410977 107 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AC245054.2-201ENST00000415639 319 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 PSMA6P3-201ENST00000428242 164 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 OR4K11P-201ENST00000431829 904 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AL159987.2-201ENST00000432754 307 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AC108734.1-201ENST00000439549 399 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 GEMIN8P3-201ENST00000445417 720 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A3Q01955 RNU6-333P-201ENST00000459117 107 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 MTND4P17-201ENST00000470444 350 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AC006517.1-201ENST00000480485 328 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A3Q01955 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A3Q01955 AC005741.1-201ENST00000511094 432 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC4.07□□□□□ -1.76
COL4A3Q01955 AC104057.1-201ENST00000515547 497 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 SNORA25.17-201ENST00000517184 124 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A3Q01955 AC091516.1-201ENST00000549191 703 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AC063950.1-201ENST00000552036 308 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.07□□□□□ -1.76
COL4A3Q01955 AC022968.1-201ENST00000567372 442 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 MIR4504-201ENST00000577413 92 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 OR4K8P-201ENST00000578842 1048 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC4.07□□□□□ -1.76
COL4A3Q01955 uc_338.12-201ENST00000616344 181 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 MIR7702-201ENST00000621931 59 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A3Q01955 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A3Q01955 MAPK10-253ENST00000641010 4072 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 MFSD8-236ENST00000641509 4050 ntBASIC4.07□□□□□ -1.76
COL4A3Q01955 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC4.07□□□□□ -1.76
COL4A3Q01955 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A3Q01955 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A3Q01955 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.07□□□□□ -1.76
COL4A3Q01955 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.07□□□□□ -1.76
COL4A3Q01955 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.07□□□□□ -1.76
COL4A3Q01955 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL4A3Q01955 HSPE1P11-201ENST00000339579 310 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 RNA5SP258-201ENST00000362750 119 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 Y_RNA.133-201ENST00000363428 110 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 RNU6-1297P-201ENST00000384415 104 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AL359634.1-202ENST00000404721 284 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 HDGFP1-201ENST00000405943 252 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AL606923.1-201ENST00000406616 190 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 HMGN1P24-201ENST00000412282 298 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.06□□□□□ -1.76
COL4A3Q01955 RNU7-182P-201ENST00000459009 62 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AL136126.1-201ENST00000473603 402 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AC093767.1-201ENST00000504523 156 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AC021146.2-201ENST00000504736 556 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 HMGB3P15-201ENST00000507326 574 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 SNORD27.1-201ENST00000516319 72 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 RNU7-143P-201ENST00000516781 65 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 MGST1-215ENST00000540056 546 ntTSL 3 BASIC4.06□□□□□ -1.76
COL4A3Q01955 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC4.06□□□□□ -1.76
COL4A3Q01955 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC4.06□□□□□ -1.76
COL4A3Q01955 AC104662.1-201ENST00000604448 511 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 AC245517.5-201ENST00000611529 162 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC4.06□□□□□ -1.76
COL4A3Q01955 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.06□□□□□ -1.76
COL4A3Q01955 AP001350.1-201ENST00000601906 1524 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC4.06□□□□□ -1.76
COL4A3Q01955 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC4.06□□□□□ -1.76
COL4A3Q01955 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL4A3Q01955 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 Y_RNA.187-201ENST00000363918 113 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 Y_RNA.339-201ENST00000365325 102 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 SNORA22B-201ENST00000383876 138 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 MIR92A2-201ENST00000385299 75 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC4.06□□□□□ -1.76
COL4A3Q01955 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
COL4A3Q01955 MIR1289-1-201ENST00000408836 144 ntBASIC4.06□□□□□ -1.76
COL4A3Q01955 ARL5AP1-201ENST00000418991 388 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 215.5 ms