Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RPS20P14-201ENST00000412545 360 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.71□□□□□ -1.66
COL6A1P12109 AC108734.1-201ENST00000439549 399 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AC004691.1-201ENST00000440376 547 ntTSL 3 BASIC4.71□□□□□ -1.66
COL6A1P12109 FGF7P3-201ENST00000454645 303 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 Y_RNA.632-201ENST00000459189 102 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC4.71□□□□□ -1.66
COL6A1P12109 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.71□□□□□ -1.66
COL6A1P12109 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.71□□□□□ -1.66
COL6A1P12109 OR5D17P-201ENST00000531492 978 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 AC012182.1-201ENST00000570133 895 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 MIR4742-201ENST00000581069 85 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 AC096577.2-201ENST00000611455 153 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AC019176.2-201ENST00000611579 315 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AC012314.7-201ENST00000619693 93 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AL354696.2-202ENST00000620300 613 ntTSL 2 BASIC4.71□□□□□ -1.66
COL6A1P12109 AC009318.4-201ENST00000620496 486 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AL357559.1-201ENST00000622228 274 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AC015871.5-202ENST00000623252 701 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 AC079597.1-201ENST00000624306 508 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 ATM-228ENST00000639240 498 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC4.71□□□□□ -1.66
COL6A1P12109 MAPK10-372ENST00000641954 3413 ntBASIC4.71□□□□□ -1.66
COL6A1P12109 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A1P12109 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A1P12109 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A1P12109 PTPRC-201ENST00000348564 4626 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL6A1P12109 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.71□□□□□ -1.66
COL6A1P12109 GHR-213ENST00000622294 4312 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A1P12109 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.7□□□□□ -1.66
COL6A1P12109 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A1P12109 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 RNU1-63P-201ENST00000383902 164 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 Y_RNA.387-201ENST00000383918 102 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 RNU6-213P-201ENST00000384051 104 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 MIR491-201ENST00000384877 84 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 U3.20-201ENST00000390909 217 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 AL590233.1-201ENST00000430017 456 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 UBE2V1P13-201ENST00000436983 439 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 HMGB1P18-201ENST00000438801 619 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 BRK1P2-201ENST00000442875 223 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 AC007547.1-201ENST00000462177 490 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 RPL9P32-201ENST00000464118 620 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 AC092994.1-201ENST00000498604 279 ntTSL 3 BASIC4.7□□□□□ -1.66
COL6A1P12109 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A1P12109 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC4.7□□□□□ -1.66
COL6A1P12109 MTCO3P44-201ENST00000510977 541 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC4.7□□□□□ -1.66
COL6A1P12109 AC112206.3-201ENST00000514578 389 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 SCARNA24.1-201ENST00000516465 137 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 Y_RNA.691-201ENST00000516611 103 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 AC026403.1-201ENST00000518938 295 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 PSMA2P1-201ENST00000526365 646 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC4.7□□□□□ -1.66
COL6A1P12109 AC090971.5-201ENST00000621102 293 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 AC048347.1-201ENST00000624621 427 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 AC009093.8-201ENST00000641769 292 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
COL6A1P12109 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 AC032011.1-201ENST00000611703 1549 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 CCDC102B-201ENST00000360242 2711 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A1P12109 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
COL6A1P12109 AC068254.2-201ENST00000623938 3577 ntBASIC4.7□□□□□ -1.66
COL6A1P12109 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.7□□□□□ -1.66
COL6A1P12109 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
COL6A1P12109 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL6A1P12109 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC4.69□□□□□ -1.66
COL6A1P12109 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL6A1P12109 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC4.69□□□□□ -1.66
COL6A1P12109 RNU6-600P-201ENST00000362524 99 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 SNORD82-201ENST00000365530 70 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 RNU4-48P-201ENST00000365559 182 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A1P12109 RPS7P15-201ENST00000415804 584 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.69□□□□□ -1.66
COL6A1P12109 DUTP6-201ENST00000425573 462 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AC091286.1-201ENST00000431233 461 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AC024082.2-201ENST00000434771 238 ntBASIC4.69□□□□□ -1.66
COL6A1P12109 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.69□□□□□ -1.66
COL6A1P12109 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.69□□□□□ -1.66
COL6A1P12109 HMGN2P26-201ENST00000463169 339 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 90.4 ms