Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCDHGA1Q9Y5H4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 NUS1P1-201ENST00000446295 882 ntBASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 AC009237.14-201ENST00000609975 1594 ntBASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCDHGA1Q9Y5H4 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDHGA1Q9Y5H4 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDHGA1Q9Y5H4 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
PCDHGA1Q9Y5H4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
PCDHGA1Q9Y5H4 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.33■□□□□ 0.53
PCDHGA1Q9Y5H4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDHGA1Q9Y5H4 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCDHGA1Q9Y5H4 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC18.33■□□□□ 0.53
PCDHGA1Q9Y5H4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC18.33■□□□□ 0.52
PCDHGA1Q9Y5H4 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 AC016734.2-201ENST00000624325 1377 ntBASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 AC092597.1-201ENST00000487352 616 ntBASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 MIR3180-1-201ENST00000580374 94 ntBASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 MIR3180-3-201ENST00000584616 94 ntBASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.32■□□□□ 0.52
PCDHGA1Q9Y5H4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 AL845331.1-201ENST00000424978 1190 ntBASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 KRT8P10-201ENST00000450021 1447 ntBASIC18.31■□□□□ 0.52
PCDHGA1Q9Y5H4 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms