Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 AL845331.1-201ENST00000424978 1190 ntBASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 CNP-204ENST00000472031 1019 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 AC092329.2-201ENST00000598402 547 ntBASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 FGF14-AS2-201ENST00000606448 1074 ntBASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 FEM1AP1-201ENST00000431297 1995 ntBASIC19.92■□□□□ 0.78
LIMD1Q9UGP4 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 SPDYE15P-201ENST00000424157 909 ntBASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 FDX1P1-201ENST00000449115 551 ntBASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
LIMD1Q9UGP4 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 SPDYE13P-201ENST00000445314 798 ntBASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
LIMD1Q9UGP4 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
LIMD1Q9UGP4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
LIMD1Q9UGP4 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
LIMD1Q9UGP4 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.88■□□□□ 0.77
LIMD1Q9UGP4 AP000347.1-202ENST00000435868 847 ntBASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms