Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 CR769767.2-201ENST00000622735 460 ntBASIC19.69■□□□□ 0.74
TDP1Q9NUW8 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.69■□□□□ 0.74
TDP1Q9NUW8 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 DAP-202ENST00000432074 1048 ntTSL 2 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 NMU-205ENST00000511469 756 ntTSL 3 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 IER3-202ENST00000376377 1350 ntBASIC19.68■□□□□ 0.74
TDP1Q9NUW8 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.68■□□□□ 0.74
TDP1Q9NUW8 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 STARP1-201ENST00000397973 869 ntBASIC19.67■□□□□ 0.74
TDP1Q9NUW8 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 USF2-205ENST00000594064 1179 ntTSL 2 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 GOLGA6L5P-202ENST00000515341 1828 ntBASIC19.67■□□□□ 0.74
TDP1Q9NUW8 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
TDP1Q9NUW8 LINC01521-201ENST00000504184 1943 ntBASIC19.66■□□□□ 0.74
TDP1Q9NUW8 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 AC112907.2-201ENST00000448639 330 ntBASIC19.66■□□□□ 0.74
TDP1Q9NUW8 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
TDP1Q9NUW8 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 AC005332.1-201ENST00000577698 1310 ntBASIC19.65■□□□□ 0.74
TDP1Q9NUW8 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.65■□□□□ 0.74
TDP1Q9NUW8 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.65■□□□□ 0.74
TDP1Q9NUW8 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TDP1Q9NUW8 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
TDP1Q9NUW8 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TDP1Q9NUW8 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
TDP1Q9NUW8 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
TDP1Q9NUW8 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms