Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.58■□□□□ 0.57
CCDC28BQ9BUN5 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC28BQ9BUN5 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.58■□□□□ 0.57
CCDC28BQ9BUN5 AC138932.1-201ENST00000534164 6830 ntBASIC18.58■□□□□ 0.57
CCDC28BQ9BUN5 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CCDC28BQ9BUN5 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
CCDC28BQ9BUN5 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
CCDC28BQ9BUN5 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CCDC28BQ9BUN5 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 ANO7L1-203ENST00000602586 1720 ntBASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 AC006015.1-201ENST00000429970 570 ntBASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCDC28BQ9BUN5 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 MADD-208ENST00000405573 1823 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 AC005829.2-201ENST00000571422 1056 ntBASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCDC28BQ9BUN5 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
CCDC28BQ9BUN5 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms