Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 SORBS3-221ENST00000523965 2028 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
SKA1Q96BD8 KRT16P6-202ENST00000425692 1426 ntBASIC19.59■□□□□ 0.73
SKA1Q96BD8 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 CD37-204ENST00000535669 1674 ntTSL 2 BASIC19.59■□□□□ 0.73
SKA1Q96BD8 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SKA1Q96BD8 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.73
SKA1Q96BD8 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.58■□□□□ 0.72
SKA1Q96BD8 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.58■□□□□ 0.72
SKA1Q96BD8 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.58■□□□□ 0.72
SKA1Q96BD8 MIR6786-201ENST00000616843 113 ntBASIC19.58■□□□□ 0.72
SKA1Q96BD8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.58■□□□□ 0.72
SKA1Q96BD8 AC092865.7-201ENST00000641832 219 ntBASIC19.58■□□□□ 0.72
SKA1Q96BD8 AL031985.4-201ENST00000642138 673 ntBASIC19.58■□□□□ 0.72
SKA1Q96BD8 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SKA1Q96BD8 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.72
SKA1Q96BD8 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
SKA1Q96BD8 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SKA1Q96BD8 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SKA1Q96BD8 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.58■□□□□ 0.72
SKA1Q96BD8 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
SKA1Q96BD8 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
SKA1Q96BD8 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.58■□□□□ 0.72
SKA1Q96BD8 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA1Q96BD8 KRT18P22-201ENST00000402024 1347 ntBASIC19.57■□□□□ 0.72
SKA1Q96BD8 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA1Q96BD8 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SKA1Q96BD8 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA1Q96BD8 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 AC005082.1-201ENST00000413042 2259 ntBASIC19.57■□□□□ 0.72
SKA1Q96BD8 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA1Q96BD8 AC116562.2-201ENST00000507042 360 ntBASIC19.57■□□□□ 0.72
SKA1Q96BD8 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 AP000525.1-201ENST00000608286 694 ntBASIC19.57■□□□□ 0.72
SKA1Q96BD8 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SKA1Q96BD8 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SKA1Q96BD8 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SKA1Q96BD8 LINC01568-207ENST00000641790 1380 ntBASIC19.57■□□□□ 0.72
SKA1Q96BD8 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
SKA1Q96BD8 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC19.56■□□□□ 0.72
SKA1Q96BD8 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.56■□□□□ 0.72
SKA1Q96BD8 AL138781.2-201ENST00000617896 1843 ntBASIC19.56■□□□□ 0.72
SKA1Q96BD8 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC19.56■□□□□ 0.72
SKA1Q96BD8 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
SKA1Q96BD8 AL590326.2-201ENST00000625139 305 ntBASIC19.56■□□□□ 0.72
SKA1Q96BD8 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
SKA1Q96BD8 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
SKA1Q96BD8 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SKA1Q96BD8 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC19.56■□□□□ 0.72
SKA1Q96BD8 AC079598.2-202ENST00000546624 1451 ntBASIC19.55■□□□□ 0.72
SKA1Q96BD8 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC19.55■□□□□ 0.72
SKA1Q96BD8 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC19.55■□□□□ 0.72
SKA1Q96BD8 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.55■□□□□ 0.72
SKA1Q96BD8 FITM1-202ENST00000559294 800 ntBASIC19.55■□□□□ 0.72
SKA1Q96BD8 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC19.55■□□□□ 0.72
SKA1Q96BD8 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC19.55■□□□□ 0.72
SKA1Q96BD8 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SKA1Q96BD8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SKA1Q96BD8 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms