Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC11.94□□□□□ -0.5
APOBP04114 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC11.94□□□□□ -0.5
APOBP04114 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC11.94□□□□□ -0.5
APOBP04114 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
APOBP04114 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 MIR564-202ENST00000385049 94 ntBASIC11.94□□□□□ -0.5
APOBP04114 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
APOBP04114 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC11.94□□□□□ -0.5
APOBP04114 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC11.94□□□□□ -0.5
APOBP04114 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC11.94□□□□□ -0.5
APOBP04114 AL390719.2-201ENST00000606993 987 ntBASIC11.94□□□□□ -0.5
APOBP04114 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 AL031284.1-201ENST00000419297 478 ntBASIC11.94□□□□□ -0.5
APOBP04114 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 POLD2P1-201ENST00000511220 997 ntBASIC11.94□□□□□ -0.5
APOBP04114 TP73-AS1-207ENST00000624167 988 ntBASIC11.94□□□□□ -0.5
APOBP04114 AC026310.3-201ENST00000625186 2373 ntBASIC11.94□□□□□ -0.5
APOBP04114 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC11.94□□□□□ -0.5
APOBP04114 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC11.94□□□□□ -0.5
APOBP04114 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC11.94□□□□□ -0.5
APOBP04114 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC11.93□□□□□ -0.5
APOBP04114 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC11.93□□□□□ -0.5
APOBP04114 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC11.93□□□□□ -0.5
APOBP04114 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
APOBP04114 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 NAA38-203ENST00000575071 553 ntTSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC11.93□□□□□ -0.5
APOBP04114 AC148477.8-201ENST00000624298 468 ntBASIC11.93□□□□□ -0.5
APOBP04114 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC11.93□□□□□ -0.5
APOBP04114 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC11.93□□□□□ -0.5
APOBP04114 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 FAM220CP-201ENST00000395253 831 ntBASIC11.93□□□□□ -0.5
APOBP04114 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC11.93□□□□□ -0.5
APOBP04114 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.5
APOBP04114 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.5
APOBP04114 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC11.92□□□□□ -0.5
APOBP04114 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 EMD-201ENST00000369835 966 ntTSL 3 BASIC11.92□□□□□ -0.5
APOBP04114 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC11.92□□□□□ -0.5
APOBP04114 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC11.92□□□□□ -0.5
APOBP04114 BNIP3P18-201ENST00000593976 575 ntBASIC11.92□□□□□ -0.5
APOBP04114 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC11.92□□□□□ -0.5
APOBP04114 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC11.92□□□□□ -0.5
APOBP04114 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC11.92□□□□□ -0.5
APOBP04114 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC11.92□□□□□ -0.5
APOBP04114 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC11.92□□□□□ -0.5
APOBP04114 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC11.92□□□□□ -0.5
APOBP04114 MIR940-201ENST00000401276 94 ntBASIC11.92□□□□□ -0.5
APOBP04114 MIR1233-2-201ENST00000408138 82 ntBASIC11.92□□□□□ -0.5
APOBP04114 MIR1233-1-201ENST00000408722 82 ntBASIC11.92□□□□□ -0.5
APOBP04114 NME1-207ENST00000480143 964 ntTSL 2 BASIC11.92□□□□□ -0.5
APOBP04114 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC11.92□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms