Protein–RNA interactions for Protein: Q8VHR0

Pcdh18, Protocadherin 18, mousemouse

Predictions only

Length 1,134 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh18Q8VHR0 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC22.24■■□□□ 1.15
Pcdh18Q8VHR0 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdh18Q8VHR0 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdh18Q8VHR0 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdh18Q8VHR0 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
Pcdh18Q8VHR0 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Pcdh18Q8VHR0 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
Pcdh18Q8VHR0 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC22.22■■□□□ 1.15
Pcdh18Q8VHR0 Gm43863-201ENSMUST00000203822 1192 ntBASIC22.22■■□□□ 1.15
Pcdh18Q8VHR0 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC22.22■■□□□ 1.15
Pcdh18Q8VHR0 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Pcdh18Q8VHR0 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
Pcdh18Q8VHR0 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC22.21■■□□□ 1.15
Pcdh18Q8VHR0 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh18Q8VHR0 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh18Q8VHR0 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Pcdh18Q8VHR0 Pcf11-205ENSMUST00000208255 1720 ntBASIC22.2■■□□□ 1.14
Pcdh18Q8VHR0 Tdp2-203ENSMUST00000223804 1136 ntBASIC22.2■■□□□ 1.14
Pcdh18Q8VHR0 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh18Q8VHR0 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC22.2■■□□□ 1.14
Pcdh18Q8VHR0 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh18Q8VHR0 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Pcdh18Q8VHR0 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh18Q8VHR0 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Pcdh18Q8VHR0 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdh18Q8VHR0 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdh18Q8VHR0 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Pcdh18Q8VHR0 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC22.17■■□□□ 1.14
Pcdh18Q8VHR0 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC22.17■■□□□ 1.14
Pcdh18Q8VHR0 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
Pcdh18Q8VHR0 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh18Q8VHR0 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh18Q8VHR0 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh18Q8VHR0 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC22.16■■□□□ 1.14
Pcdh18Q8VHR0 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh18Q8VHR0 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh18Q8VHR0 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Pcdh18Q8VHR0 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdh18Q8VHR0 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
Pcdh18Q8VHR0 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC22.15■■□□□ 1.14
Pcdh18Q8VHR0 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC22.15■■□□□ 1.14
Pcdh18Q8VHR0 Gm9397-201ENSMUST00000200125 605 ntBASIC22.15■■□□□ 1.14
Pcdh18Q8VHR0 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.14
Pcdh18Q8VHR0 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC22.14■■□□□ 1.14
Pcdh18Q8VHR0 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC22.14■■□□□ 1.14
Pcdh18Q8VHR0 AC157572.2-201ENSMUST00000226970 908 ntBASIC22.14■■□□□ 1.13
Pcdh18Q8VHR0 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
Pcdh18Q8VHR0 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
Pcdh18Q8VHR0 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdh18Q8VHR0 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
Pcdh18Q8VHR0 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC22.12■■□□□ 1.13
Pcdh18Q8VHR0 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdh18Q8VHR0 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC22.12■■□□□ 1.13
Pcdh18Q8VHR0 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC22.12■■□□□ 1.13
Pcdh18Q8VHR0 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
Pcdh18Q8VHR0 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC22.11■■□□□ 1.13
Pcdh18Q8VHR0 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdh18Q8VHR0 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
Pcdh18Q8VHR0 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
Pcdh18Q8VHR0 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC22.1■■□□□ 1.13
Pcdh18Q8VHR0 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdh18Q8VHR0 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdh18Q8VHR0 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdh18Q8VHR0 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
Pcdh18Q8VHR0 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC22.1■■□□□ 1.13
Pcdh18Q8VHR0 Gm24970-201ENSMUST00000175582 82 ntBASIC22.09■■□□□ 1.13
Pcdh18Q8VHR0 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Pcdh18Q8VHR0 Slc22a17-210ENSMUST00000228495 2340 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Pcdh18Q8VHR0 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
Pcdh18Q8VHR0 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
Pcdh18Q8VHR0 Gm13042-201ENSMUST00000119244 1955 ntBASIC22.08■■□□□ 1.12
Pcdh18Q8VHR0 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
Pcdh18Q8VHR0 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdh18Q8VHR0 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
Pcdh18Q8VHR0 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Pcdh18Q8VHR0 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Pcdh18Q8VHR0 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC22.05■■□□□ 1.12
Pcdh18Q8VHR0 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Pcdh18Q8VHR0 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Pcdh18Q8VHR0 Gm45855-201ENSMUST00000212546 880 ntBASIC22.04■■□□□ 1.12
Pcdh18Q8VHR0 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC22.04■■□□□ 1.12
Pcdh18Q8VHR0 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdh18Q8VHR0 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdh18Q8VHR0 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
Pcdh18Q8VHR0 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdh18Q8VHR0 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Pcdh18Q8VHR0 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC22.01■■□□□ 1.11
Pcdh18Q8VHR0 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdh18Q8VHR0 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdh18Q8VHR0 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC22.01■■□□□ 1.11
Pcdh18Q8VHR0 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC22.01■■□□□ 1.11
Pcdh18Q8VHR0 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdh18Q8VHR0 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
Pcdh18Q8VHR0 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC22■■□□□ 1.11
Pcdh18Q8VHR0 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
Pcdh18Q8VHR0 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC22■■□□□ 1.11
Pcdh18Q8VHR0 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC22■■□□□ 1.11
Pcdh18Q8VHR0 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdh18Q8VHR0 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
Pcdh18Q8VHR0 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 76,532 protein–RNA pairs in 15.7 ms