Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Gm9910-201ENSMUST00000195385 1550 ntBASIC29.62■■■□□ 2.33
Ubr3Q5U430 Gm22567-201ENSMUST00000175542 342 ntBASIC29.61■■■□□ 2.33
Ubr3Q5U430 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
Ubr3Q5U430 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC29.61■■■□□ 2.33
Ubr3Q5U430 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC29.6■■■□□ 2.33
Ubr3Q5U430 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Ubr3Q5U430 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC29.59■■■□□ 2.33
Ubr3Q5U430 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC29.59■■■□□ 2.33
Ubr3Q5U430 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
Ubr3Q5U430 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
Ubr3Q5U430 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Ubr3Q5U430 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC29.57■■■□□ 2.32
Ubr3Q5U430 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Ubr3Q5U430 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC29.57■■■□□ 2.32
Ubr3Q5U430 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC29.56■■■□□ 2.32
Ubr3Q5U430 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Ubr3Q5U430 Gm10420-201ENSMUST00000121713 882 ntBASIC29.56■■■□□ 2.32
Ubr3Q5U430 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC29.56■■■□□ 2.32
Ubr3Q5U430 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Ubr3Q5U430 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
Ubr3Q5U430 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC29.55■■■□□ 2.32
Ubr3Q5U430 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC29.55■■■□□ 2.32
Ubr3Q5U430 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC29.55■■■□□ 2.32
Ubr3Q5U430 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC29.54■■■□□ 2.32
Ubr3Q5U430 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC29.53■■■□□ 2.32
Ubr3Q5U430 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC29.53■■■□□ 2.32
Ubr3Q5U430 Neurl1b-202ENSMUST00000182897 1231 ntTSL 5 BASIC29.53■■■□□ 2.32
Ubr3Q5U430 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC29.53■■■□□ 2.32
Ubr3Q5U430 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC29.52■■■□□ 2.32
Ubr3Q5U430 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC29.51■■■□□ 2.31
Ubr3Q5U430 Gm5921-201ENSMUST00000075898 882 ntBASIC29.51■■■□□ 2.31
Ubr3Q5U430 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC29.51■■■□□ 2.31
Ubr3Q5U430 Gm5067-201ENSMUST00000170449 1009 ntBASIC29.51■■■□□ 2.31
Ubr3Q5U430 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Ubr3Q5U430 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Ubr3Q5U430 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Ubr3Q5U430 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
Ubr3Q5U430 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC29.5■■■□□ 2.31
Ubr3Q5U430 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
Ubr3Q5U430 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC29.49■■■□□ 2.31
Ubr3Q5U430 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC29.49■■■□□ 2.31
Ubr3Q5U430 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC29.49■■■□□ 2.31
Ubr3Q5U430 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
Ubr3Q5U430 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
Ubr3Q5U430 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
Ubr3Q5U430 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC29.46■■■□□ 2.31
Ubr3Q5U430 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ubr3Q5U430 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
Ubr3Q5U430 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
Ubr3Q5U430 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.3
Ubr3Q5U430 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
Ubr3Q5U430 Gm9812-201ENSMUST00000061934 968 ntBASIC29.42■■■□□ 2.3
Ubr3Q5U430 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Ubr3Q5U430 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
Ubr3Q5U430 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC29.41■■■□□ 2.3
Ubr3Q5U430 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC29.41■■■□□ 2.3
Ubr3Q5U430 Gm15039-201ENSMUST00000118914 875 ntBASIC29.41■■■□□ 2.3
Ubr3Q5U430 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Ubr3Q5U430 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Ubr3Q5U430 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
Ubr3Q5U430 Galnt12-202ENSMUST00000107744 2077 ntTSL 1 (best) BASIC29.39■■■□□ 2.29
Ubr3Q5U430 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Ubr3Q5U430 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Ubr3Q5U430 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Ubr3Q5U430 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Ubr3Q5U430 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC29.38■■■□□ 2.29
Ubr3Q5U430 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
Ubr3Q5U430 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC29.37■■■□□ 2.29
Ubr3Q5U430 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Ubr3Q5U430 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC29.37■■■□□ 2.29
Ubr3Q5U430 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
Ubr3Q5U430 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC29.36■■■□□ 2.29
Ubr3Q5U430 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Ubr3Q5U430 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Ubr3Q5U430 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
Ubr3Q5U430 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC29.34■■■□□ 2.29
Ubr3Q5U430 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC29.34■■■□□ 2.29
Ubr3Q5U430 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
Ubr3Q5U430 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC29.33■■■□□ 2.29
Ubr3Q5U430 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC29.33■■■□□ 2.29
Ubr3Q5U430 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Ubr3Q5U430 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC29.32■■■□□ 2.28
Ubr3Q5U430 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC29.32■■■□□ 2.28
Ubr3Q5U430 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
Ubr3Q5U430 Gm13594-201ENSMUST00000137582 476 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
Ubr3Q5U430 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Ubr3Q5U430 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC29.29■■■□□ 2.28
Ubr3Q5U430 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Ubr3Q5U430 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
Ubr3Q5U430 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC29.27■■■□□ 2.28
Ubr3Q5U430 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC29.27■■■□□ 2.28
Ubr3Q5U430 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC29.27■■■□□ 2.28
Ubr3Q5U430 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC29.25■■■□□ 2.27
Ubr3Q5U430 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC29.24■■■□□ 2.27
Ubr3Q5U430 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
Ubr3Q5U430 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC29.24■■■□□ 2.27
Ubr3Q5U430 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC29.23■■■□□ 2.27
Ubr3Q5U430 Gm5522-201ENSMUST00000189483 1242 ntBASIC29.23■■■□□ 2.27
Ubr3Q5U430 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC29.22■■■□□ 2.27
Ubr3Q5U430 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC29.22■■■□□ 2.27
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms