Protein–RNA interactions for Protein: P70362

Ufd1, Ubiquitin recognition factor in ER-associated degradation protein 1, mousemouse

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ufd1P70362 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ufd1P70362 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Ufd1P70362 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
Ufd1P70362 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Ufd1P70362 Slc17a7-201ENSMUST00000085374 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ufd1P70362 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ufd1P70362 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC19.82■□□□□ 0.76
Ufd1P70362 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
Ufd1P70362 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Ufd1P70362 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.82■□□□□ 0.76
Ufd1P70362 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Ufd1P70362 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ufd1P70362 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ufd1P70362 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Ufd1P70362 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Ufd1P70362 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC19.81■□□□□ 0.76
Ufd1P70362 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
Ufd1P70362 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ufd1P70362 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ufd1P70362 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ufd1P70362 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ufd1P70362 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Ufd1P70362 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Ufd1P70362 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC19.78■□□□□ 0.76
Ufd1P70362 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
Ufd1P70362 Vdac3-202ENSMUST00000179233 1423 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ufd1P70362 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ufd1P70362 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ufd1P70362 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Ufd1P70362 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Ufd1P70362 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Ufd1P70362 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ufd1P70362 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Ufd1P70362 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.76■□□□□ 0.75
Ufd1P70362 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Ufd1P70362 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Ufd1P70362 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
Ufd1P70362 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC19.76■□□□□ 0.75
Ufd1P70362 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
Ufd1P70362 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ufd1P70362 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ufd1P70362 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Ufd1P70362 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ufd1P70362 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Ufd1P70362 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ufd1P70362 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Ufd1P70362 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ufd1P70362 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ufd1P70362 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
Ufd1P70362 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Ufd1P70362 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Ufd1P70362 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Ufd1P70362 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ufd1P70362 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
Ufd1P70362 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ufd1P70362 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ufd1P70362 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ufd1P70362 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ufd1P70362 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
Ufd1P70362 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Ufd1P70362 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Ufd1P70362 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC19.72■□□□□ 0.75
Ufd1P70362 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Ltk-206ENSMUST00000182203 2232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Ufd1P70362 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ufd1P70362 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ufd1P70362 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.71■□□□□ 0.75
Ufd1P70362 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ufd1P70362 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Ufd1P70362 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ufd1P70362 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Ufd1P70362 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Ufd1P70362 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ufd1P70362 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC19.69■□□□□ 0.74
Ufd1P70362 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC19.69■□□□□ 0.74
Ufd1P70362 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Ufd1P70362 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Ufd1P70362 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ufd1P70362 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ufd1P70362 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC19.68■□□□□ 0.74
Ufd1P70362 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Ufd1P70362 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ufd1P70362 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Ufd1P70362 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Ufd1P70362 Gm6277-202ENSMUST00000224036 2779 ntBASIC19.66■□□□□ 0.74
Ufd1P70362 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ufd1P70362 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.66■□□□□ 0.74
Ufd1P70362 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Ufd1P70362 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Ufd1P70362 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ufd1P70362 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
Ufd1P70362 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.65■□□□□ 0.74
Ufd1P70362 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 127.7 ms