Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC022133.1-201ENST00000490961 571 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 RPS27AP13-201ENST00000498403 237 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 ACA59.1-201ENST00000515966 143 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 SNORD116-26-201ENST00000516006 96 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 RNA5SP230-201ENST00000517039 122 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC109329.1-201ENST00000518744 317 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC040958.1-201ENST00000561102 201 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 RN7SL753P-201ENST00000581238 290 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC067852.4-201ENST00000590314 478 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AC010620.2-201ENST00000600135 313 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 MIR3976-201ENST00000606807 139 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 MIR6839-201ENST00000620425 113 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 AL450472.1-202ENST00000637286 180 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 HSPA8P1-201ENST00000425843 1833 ntBASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HIF3AQ9Y2N7 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AL391987.6-201ENST00000305671 199 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-371P-201ENST00000364283 108 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.277-201ENST00000364754 102 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-125P-201ENST00000384505 107 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 RNU2-43P-201ENST00000410306 190 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 RPL21P90-201ENST00000415692 466 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 GSTM5P1-201ENST00000434751 660 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AC064862.4-201ENST00000442180 334 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 GAPDHP25-201ENST00000447061 1001 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 RPL21P41-201ENST00000459863 264 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 SNORA31.3-201ENST00000516029 96 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AC069113.1-201ENST00000517763 267 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 DEFB108E-201ENST00000524692 240 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AP004607.2-201ENST00000533949 322 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 MIR5692A1-201ENST00000580523 69 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 MIR4505-201ENST00000582238 73 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 MIR4660-201ENST00000583549 74 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AC006557.5-201ENST00000603126 811 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 THAP12P5-201ENST00000405864 2275 ntBASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 NADK2-203ENST00000397338 3614 ntTSL 2 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
HIF3AQ9Y2N7 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 DDX18P3-201ENST00000404856 2007 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.183-201ENST00000363882 113 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.269-201ENST00000364685 89 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 RNA5SP240-201ENST00000365355 128 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 Y_RNA.533-201ENST00000384596 114 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 SAR1AP2-201ENST00000392696 594 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 RNU6-325P-201ENST00000411132 105 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 COX5BP7-201ENST00000414780 274 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 AL138785.1-201ENST00000425821 331 ntBASIC4.81□□□□□ -1.64
HIF3AQ9Y2N7 MTND6P12-201ENST00000428247 522 ntBASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms