Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 NTS-203ENST00000551529 801 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX4Q9UIU6 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX4Q9UIU6 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.57□□□□□ -1.84
SIX4Q9UIU6 TGIF1P1-201ENST00000558095 802 ntBASIC3.57□□□□□ -1.84
SIX4Q9UIU6 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC3.57□□□□□ -1.84
SIX4Q9UIU6 AL157394.1-201ENST00000562983 1224 ntBASIC3.57□□□□□ -1.84
SIX4Q9UIU6 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC3.57□□□□□ -1.84
SIX4Q9UIU6 AC103710.3-201ENST00000608157 948 ntBASIC3.57□□□□□ -1.84
SIX4Q9UIU6 TMBIM4-213ENST00000613669 851 ntTSL 5 BASIC3.57□□□□□ -1.84
SIX4Q9UIU6 MIR8058-201ENST00000615737 89 ntBASIC3.57□□□□□ -1.84
SIX4Q9UIU6 AL356321.1-201ENST00000621360 228 ntBASIC3.57□□□□□ -1.84
SIX4Q9UIU6 AC110801.1-201ENST00000623590 212 ntBASIC3.57□□□□□ -1.84
SIX4Q9UIU6 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SIX4Q9UIU6 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
SIX4Q9UIU6 USP8P1-201ENST00000494673 3183 ntBASIC3.57□□□□□ -1.84
SIX4Q9UIU6 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 C6orf10-205ENST00000527965 2076 ntAPPRIS ALT2 TSL 2 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC092125.1-201ENST00000562568 1995 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 RNU6-989P-201ENST00000362756 107 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 RN7SKP226-201ENST00000364912 300 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 EEF1E1-201ENST00000379715 1077 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 Y_RNA.493-201ENST00000384422 102 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 RNA5SP120-201ENST00000410900 112 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 RNU6-195P-201ENST00000411352 109 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC078974.1-201ENST00000411597 223 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 SPA17P1-201ENST00000416656 452 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 C1DP2-201ENST00000418167 426 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 GAPDHP17-201ENST00000449858 1001 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 RPS20P24-201ENST00000457473 361 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 RPL23AP67-201ENST00000465341 474 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 RN7SL601P-201ENST00000471221 293 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 RN7SKP116-201ENST00000516902 319 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 SMIM18-201ENST00000517349 905 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AP003181.2-201ENST00000528941 181 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC009101.1-201ENST00000568135 242 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC090615.1-201ENST00000577519 154 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 MTATP6P3-201ENST00000581686 676 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AL162713.1-201ENST00000604480 262 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AL161729.4-201ENST00000604650 476 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC004853.1-201ENST00000604902 698 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC092794.1-201ENST00000612734 582 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 MIR7112-201ENST00000616126 65 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC040168.1-201ENST00000623594 991 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 AC017071.1-201ENST00000564407 2204 ntBASIC3.56□□□□□ -1.84
SIX4Q9UIU6 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 ZNF639-206ENST00000484866 1730 ntAPPRIS P1 TSL 2 BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
SIX4Q9UIU6 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 RNY4P24-201ENST00000362735 96 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 RNA5SP258-201ENST00000362750 119 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 U8.3-201ENST00000363321 132 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 RNY4P34-201ENST00000364779 95 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AP002088.1-201ENST00000382740 395 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 RNU5A-6P-201ENST00000384136 116 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 MT-TC-201ENST00000387405 66 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AL357075.1-201ENST00000404107 726 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 RNA5SP229-201ENST00000410809 99 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 FCF1P9-201ENST00000412546 282 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC005517.2-201ENST00000424673 553 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC006946.1-201ENST00000429106 328 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC073614.1-201ENST00000438690 650 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 RPL17P49-201ENST00000443728 411 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 snoU13.8-201ENST00000458890 104 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC092451.1-201ENST00000480211 153 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 MTND1P3-201ENST00000484956 952 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 RPL7P47-201ENST00000497299 556 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC105252.1-201ENST00000503089 286 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC093752.2-201ENST00000506942 573 ntTSL 5 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC006390.1-201ENST00000508068 283 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC021146.1-201ENST00000511202 716 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 APOOP4-201ENST00000513530 597 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 RNU2-58P-201ENST00000516403 183 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 UNC13C-202ENST00000539562 938 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC123904.2-201ENST00000548059 300 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC087883.1-201ENST00000551882 391 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 ZNF192P1-203ENST00000565888 810 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AC034268.2-201ENST00000571784 482 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 UBE2L4-201ENST00000587688 464 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.55□□□□□ -1.84
SIX4Q9UIU6 CKS1BP3-201ENST00000600888 237 ntBASIC3.55□□□□□ -1.84
SIX4Q9UIU6 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC3.55□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms