Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 AC026523.1-202ENST00000559363 1401 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 AC092747.4-201ENST00000620519 1861 ntBASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
NUCKS1Q9H1E3 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RN7SKP115-201ENST00000363177 317 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RNU6-1078P-201ENST00000364522 103 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RNA5SP90-201ENST00000364801 99 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 SMIM11P1-201ENST00000369586 178 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RNU6-1293P-201ENST00000384077 107 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RNA5SP339-201ENST00000390987 122 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RN7SKP16-201ENST00000410180 299 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RNU6-1140P-201ENST00000410517 106 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 AL355433.1-201ENST00000422804 300 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 UBE2V1P4-201ENST00000425374 344 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RPS17P13-201ENST00000448974 407 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RNU7-169P-201ENST00000459456 61 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RN7SL432P-201ENST00000484057 298 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 AC135721.1-201ENST00000497954 479 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 MDM4-213ENST00000507825 481 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 AF186190.1-201ENST00000517470 480 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 LINC01355-201ENST00000566551 5444 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 AC073410.2-201ENST00000603240 332 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 AC131238.1-201ENST00000617135 328 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 MIR6837-201ENST00000620884 64 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 RNU6-156P-201ENST00000621869 107 ntBASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NUCKS1Q9H1E3 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 OR14L1P-202ENST00000641545 3009 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 BBX-203ENST00000402543 3980 ntTSL 5 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 MIR335-201ENST00000362173 94 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 RNA5SP183-201ENST00000362452 119 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 Y_RNA.84-201ENST00000363011 104 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 Y_RNA.200-201ENST00000364018 102 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 Y_RNA.237-201ENST00000364439 102 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AL035079.1-201ENST00000405210 287 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 RPS4XP7-201ENST00000406274 780 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 RN7SKP159-201ENST00000410657 292 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 RNU2-15P-201ENST00000410692 191 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AL139156.1-201ENST00000412785 841 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 UBE2D3P2-201ENST00000424409 445 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 RPS29P10-201ENST00000439197 166 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AC022795.1-201ENST00000473808 480 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 RPS27AP1-201ENST00000475545 471 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 OR2AO1P-201ENST00000476497 403 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AC109329.1-201ENST00000518744 317 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AC012339.2-201ENST00000523996 453 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 EIF4A2P5-201ENST00000529914 499 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 STX3-204ENST00000530221 534 ntTSL 5 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AP002770.2-201ENST00000543613 532 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 MIR1269B-201ENST00000580405 75 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 TEX41-280ENST00000629185 591 ntTSL 5 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUCKS1Q9H1E3 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 Y_RNA.48-201ENST00000362710 103 ntBASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 Y_RNA.352-201ENST00000365439 102 ntBASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 RNU6-611P-201ENST00000384276 104 ntBASIC5.59□□□□□ -1.51
NUCKS1Q9H1E3 Y_RNA.471-201ENST00000384312 102 ntBASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms