Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 snoU13.28-201ENST00000459235 104 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 FAM172BP-201ENST00000487497 1089 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 C8orf22-204ENST00000522267 739 ntAPPRIS ALT1 TSL 2 BASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 CTAGE1-202ENST00000525417 1267 ntAPPRIS ALT2 BASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 OR4P1P-201ENST00000530808 1136 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 TRAV28-201ENST00000557548 323 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 ANP32BP3-201ENST00000559213 706 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 VN1R88P-201ENST00000596787 292 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 MIR1264-201ENST00000616374 69 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 AC068722.2-201ENST00000618734 544 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 PSMD5-AS1-215ENST00000640622 205 ntBASIC2.34□□□□□ -2.03
CCDC112Q8NEF3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
CCDC112Q8NEF3 RNA5SP289-201ENST00000362332 137 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 MIR649-201ENST00000384843 97 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 U3.20-201ENST00000390909 217 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 RNU6-796P-201ENST00000391086 107 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 TATDN1P1-201ENST00000414123 891 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 UBE2V1P13-201ENST00000436983 439 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 HMGB3P12-201ENST00000438745 556 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AL121871.1-201ENST00000443413 436 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 IFNA11P-201ENST00000446352 526 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AL589880.1-201ENST00000448271 287 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AL118520.1-201ENST00000450770 291 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 RPS20P24-201ENST00000457473 361 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AC108734.3-201ENST00000481241 1165 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 OR52A4P-202ENST00000481634 799 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AC104108.1-201ENST00000509930 412 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 OR8K4P-201ENST00000534608 872 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 OR11H5P-201ENST00000554039 926 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AL049775.2-201ENST00000557547 558 ntTSL 4 BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AC011260.1-201ENST00000578420 472 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 MIR3117-201ENST00000584034 78 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 HMGB1P24-202ENST00000615653 685 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AL163051.2-201ENST00000618976 735 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AC098657.3-201ENST00000620434 263 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AP006248.3-201ENST00000623580 594 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AC130650.2-201ENST00000618736 2403 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 AL109809.4-201ENST00000603520 2185 ntBASIC2.33□□□□□ -2.04
CCDC112Q8NEF3 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC009487.4-201ENST00000624969 3585 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 RNU6-173P-201ENST00000364215 104 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 LGI1-201ENST00000371413 1247 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 SNORA6-201ENST00000384033 151 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 MIR221-201ENST00000385135 110 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 RNA5SP354-201ENST00000391247 136 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 U3.29-201ENST00000391296 212 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 DPH3P2-201ENST00000422618 250 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 OR4K11P-201ENST00000431829 904 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC004866.2-201ENST00000438285 481 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 RNU7-26P-201ENST00000458980 63 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 IGKV3-31-201ENST00000523109 329 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AP000873.5-201ENST00000533906 236 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 MIR4648-201ENST00000580107 72 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AP001542.1-201ENST00000591314 200 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC092070.1-201ENST00000600257 359 ntTSL 3 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 BNIP3P4-201ENST00000604946 565 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC096586.1-201ENST00000610267 561 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 TUG1_1.1-201ENST00000610654 145 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 DUXAP9-208ENST00000622815 614 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 AC098679.5-201ENST00000624394 571 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 MIR203B-201ENST00000636080 86 ntBASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC112Q8NEF3 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 RNU1-52P-201ENST00000384190 164 ntBASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 MIR524-201ENST00000385242 87 ntBASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 FBXO11-203ENST00000405808 299 ntTSL 5 BASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 RNU6-77P-201ENST00000410554 91 ntBASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 UBE2V1P11-201ENST00000411559 285 ntBASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 RPL17P12-201ENST00000413391 526 ntBASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 AC093422.3-201ENST00000428506 305 ntBASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 AL139415.2-201ENST00000431968 163 ntBASIC2.31□□□□□ -2.04
CCDC112Q8NEF3 TRIM60P13-201ENST00000432350 1283 ntBASIC2.31□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 96.4 ms