Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC1.37□□□□□ -2.19
VCANP13611 C1orf189-201ENST00000368525 387 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
VCANP13611 SNORA18.2-201ENST00000383865 132 ntBASIC1.37□□□□□ -2.19
VCANP13611 Z85995.1-201ENST00000415547 335 ntBASIC1.37□□□□□ -2.19
VCANP13611 WARS2P1-201ENST00000429678 537 ntBASIC1.37□□□□□ -2.19
VCANP13611 AL596276.1-201ENST00000434465 418 ntBASIC1.37□□□□□ -2.19
VCANP13611 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.37□□□□□ -2.19
VCANP13611 EIF2S2P4-201ENST00000461070 984 ntBASIC1.37□□□□□ -2.19
VCANP13611 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
VCANP13611 AL161713.1-201ENST00000555538 145 ntBASIC1.37□□□□□ -2.19
VCANP13611 U8.1-201ENST00000362843 134 ntBASIC1.36□□□□□ -2.19
VCANP13611 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC1.36□□□□□ -2.19
VCANP13611 AC012493.3-201ENST00000604494 112 ntBASIC1.36□□□□□ -2.19
VCANP13611 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
VCANP13611 AC092881.1-201ENST00000638218 2733 ntBASIC1.36□□□□□ -2.19
VCANP13611 RNU6-666P-201ENST00000363499 107 ntBASIC1.36□□□□□ -2.19
VCANP13611 HMGN2P20-201ENST00000437531 273 ntBASIC1.36□□□□□ -2.19
VCANP13611 RPS27P5-201ENST00000444247 244 ntBASIC1.36□□□□□ -2.19
VCANP13611 U73023.1-201ENST00000603134 700 ntBASIC1.36□□□□□ -2.19
VCANP13611 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC1.36□□□□□ -2.19
VCANP13611 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.36□□□□□ -2.19
VCANP13611 TMEM161B-210ENST00000511218 1351 ntTSL 2 BASIC1.36□□□□□ -2.19
VCANP13611 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
VCANP13611 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC1.36□□□□□ -2.19
VCANP13611 Y_RNA.136-201ENST00000363444 102 ntBASIC1.36□□□□□ -2.19
VCANP13611 AL030996.1-201ENST00000411430 235 ntBASIC1.36□□□□□ -2.19
VCANP13611 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.36□□□□□ -2.19
VCANP13611 MTCYBP45-201ENST00000435243 565 ntBASIC1.36□□□□□ -2.19
VCANP13611 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC1.36□□□□□ -2.19
VCANP13611 PSPHP1-201ENST00000450062 261 ntBASIC1.36□□□□□ -2.19
VCANP13611 RNU1-40P-201ENST00000516816 164 ntBASIC1.36□□□□□ -2.19
VCANP13611 RNU1-97P-201ENST00000516872 164 ntBASIC1.36□□□□□ -2.19
VCANP13611 AP004242.1-201ENST00000533701 349 ntBASIC1.36□□□□□ -2.19
VCANP13611 AL158032.1-201ENST00000605401 106 ntBASIC1.36□□□□□ -2.19
VCANP13611 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC1.35□□□□□ -2.19
VCANP13611 RNU6-461P-201ENST00000364195 107 ntBASIC1.35□□□□□ -2.19
VCANP13611 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
VCANP13611 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.35□□□□□ -2.19
VCANP13611 AC107398.2-201ENST00000508081 601 ntTSL 5 BASIC1.35□□□□□ -2.19
VCANP13611 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.35□□□□□ -2.19
VCANP13611 SEPT7P9-203ENST00000604116 343 ntBASIC1.35□□□□□ -2.19
VCANP13611 AC010329.2-201ENST00000595195 2737 ntBASIC1.35□□□□□ -2.19
VCANP13611 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.35□□□□□ -2.19
VCANP13611 AL138830.2-202ENST00000446358 786 ntTSL 2 BASIC1.35□□□□□ -2.19
VCANP13611 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.35□□□□□ -2.19
VCANP13611 OR9N1P-202ENST00000494289 481 ntBASIC1.35□□□□□ -2.19
VCANP13611 AC098850.3-201ENST00000577569 771 ntTSL 3 BASIC1.35□□□□□ -2.19
VCANP13611 AC005034.5-201ENST00000604219 466 ntBASIC1.35□□□□□ -2.19
VCANP13611 AL031775.1-201ENST00000607014 887 ntBASIC1.35□□□□□ -2.19
VCANP13611 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.35□□□□□ -2.19
VCANP13611 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.34□□□□□ -2.19
VCANP13611 AL445687.1-201ENST00000439946 251 ntBASIC1.34□□□□□ -2.19
VCANP13611 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.34□□□□□ -2.19
VCANP13611 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
VCANP13611 RNU6-670P-201ENST00000364312 104 ntBASIC1.34□□□□□ -2.19
VCANP13611 AL442647.1-201ENST00000449485 481 ntTSL 5 BASIC1.34□□□□□ -2.19
VCANP13611 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
VCANP13611 AC007375.1-201ENST00000554513 578 ntBASIC1.34□□□□□ -2.19
VCANP13611 AC087588.2-201ENST00000617667 426 ntBASIC1.34□□□□□ -2.19
VCANP13611 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
VCANP13611 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.2
VCANP13611 RPL17P12-201ENST00000413391 526 ntBASIC1.34□□□□□ -2.2
VCANP13611 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.34□□□□□ -2.2
VCANP13611 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.34□□□□□ -2.2
VCANP13611 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.34□□□□□ -2.2
VCANP13611 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC1.34□□□□□ -2.2
VCANP13611 MTND4P12-201ENST00000498999 1377 ntBASIC1.33□□□□□ -2.2
VCANP13611 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.33□□□□□ -2.2
VCANP13611 RNU1-148P-201ENST00000384472 162 ntBASIC1.33□□□□□ -2.2
VCANP13611 CYCSP33-201ENST00000414485 327 ntBASIC1.33□□□□□ -2.2
VCANP13611 AC093752.1-206ENST00000511823 336 ntBASIC1.33□□□□□ -2.2
VCANP13611 AP003033.1-201ENST00000527244 415 ntBASIC1.33□□□□□ -2.2
VCANP13611 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC1.33□□□□□ -2.2
VCANP13611 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC1.33□□□□□ -2.2
VCANP13611 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.33□□□□□ -2.2
VCANP13611 RPL21P131-201ENST00000497298 483 ntBASIC1.33□□□□□ -2.2
VCANP13611 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC1.33□□□□□ -2.2
VCANP13611 AC004854.1-201ENST00000440356 349 ntBASIC1.33□□□□□ -2.2
VCANP13611 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.33□□□□□ -2.2
VCANP13611 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.33□□□□□ -2.2
VCANP13611 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.32□□□□□ -2.2
VCANP13611 AC009961.3-201ENST00000449832 765 ntBASIC1.32□□□□□ -2.2
VCANP13611 AC087190.1-201ENST00000484462 480 ntBASIC1.32□□□□□ -2.2
VCANP13611 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.32□□□□□ -2.2
VCANP13611 AP005435.4-201ENST00000529514 284 ntBASIC1.32□□□□□ -2.2
VCANP13611 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
VCANP13611 MIR6513-201ENST00000621188 64 ntBASIC1.32□□□□□ -2.2
VCANP13611 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
VCANP13611 TATDN1P1-201ENST00000414123 891 ntBASIC1.32□□□□□ -2.2
VCANP13611 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.32□□□□□ -2.2
VCANP13611 AP003072.2-201ENST00000527756 676 ntBASIC1.32□□□□□ -2.2
VCANP13611 AC007742.2-201ENST00000618226 398 ntBASIC1.32□□□□□ -2.2
VCANP13611 AC091925.1-201ENST00000623204 462 ntBASIC1.32□□□□□ -2.2
VCANP13611 AC066616.2-201ENST00000559334 1481 ntBASIC1.32□□□□□ -2.2
VCANP13611 CUL4AP1-201ENST00000514750 1863 ntBASIC1.32□□□□□ -2.2
VCANP13611 MRPS36P1-201ENST00000421291 307 ntBASIC1.31□□□□□ -2.2
VCANP13611 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1.31□□□□□ -2.2
VCANP13611 C1GALT1P2-201ENST00000510813 1104 ntBASIC1.31□□□□□ -2.2
VCANP13611 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.31□□□□□ -2.2
VCANP13611 RNU4-60P-201ENST00000517239 135 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms