Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 AC127537.2-201ENST00000439258 465 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 SDCBPP1-201ENST00000440192 890 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 RPL23AP20-201ENST00000447965 421 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 MTND3P10-201ENST00000450967 341 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 RPS20P32-201ENST00000456044 356 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 RPS20P21-201ENST00000466859 343 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 AC087385.1-201ENST00000475062 312 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC093725.2-201ENST00000507808 356 ntTSL 2 BASIC3.3□□□□□ -1.88
LMX1BO60663 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.3□□□□□ -1.88
LMX1BO60663 Vault.3-201ENST00000516676 95 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 IGLVIV-53-201ENST00000520107 367 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 AL512310.1-201ENST00000548639 172 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC3.3□□□□□ -1.88
LMX1BO60663 AL121576.1-201ENST00000556055 276 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 MEG8-218ENST00000556720 456 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 AL356432.3-201ENST00000568952 465 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC069061.2-202ENST00000580280 357 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC3.3□□□□□ -1.88
LMX1BO60663 AC060780.3-201ENST00000589464 80 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC135012.2-201ENST00000600234 479 ntTSL 2 BASIC3.3□□□□□ -1.88
LMX1BO60663 BNIP3P9-201ENST00000603714 553 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC011468.4-201ENST00000603942 409 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 MIR98-201ENST00000606724 119 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AL133173.2-201ENST00000614270 90 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC091953.5-201ENST00000622919 233 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC3.3□□□□□ -1.88
LMX1BO60663 CFL2-202ENST00000341223 3131 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
LMX1BO60663 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.3□□□□□ -1.88
LMX1BO60663 AL136964.1-201ENST00000622038 2990 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 AC093908.1-201ENST00000623125 8092 ntBASIC3.3□□□□□ -1.88
LMX1BO60663 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.29□□□□□ -1.88
LMX1BO60663 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
LMX1BO60663 MYOT-202ENST00000421631 1474 ntTSL 2 BASIC3.29□□□□□ -1.88
LMX1BO60663 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
LMX1BO60663 SNORA5A-201ENST00000384111 134 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 RNU6-1207P-201ENST00000384343 107 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 MIR34B-201ENST00000385076 84 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AC068050.1-201ENST00000394891 380 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 SOD2P1-201ENST00000396543 562 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC3.29□□□□□ -1.88
LMX1BO60663 AC004987.3-201ENST00000413879 771 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC3.29□□□□□ -1.88
LMX1BO60663 AC091286.1-201ENST00000431233 461 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 NDUFB1P1-201ENST00000435191 180 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 USP9YP8-201ENST00000441913 500 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC3.29□□□□□ -1.88
LMX1BO60663 FDX1P2-201ENST00000450769 375 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AP1S2P1-201ENST00000457344 379 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AL359095.1-201ENST00000457383 635 ntTSL 3 BASIC3.29□□□□□ -1.88
LMX1BO60663 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC3.29□□□□□ -1.88
LMX1BO60663 AC055855.1-201ENST00000489563 579 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.29□□□□□ -1.88
LMX1BO60663 AC010587.1-201ENST00000505809 469 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 HMGN1P11-201ENST00000508668 303 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC3.29□□□□□ -1.88
LMX1BO60663 RNU6-875P-201ENST00000516488 106 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC3.29□□□□□ -1.88
LMX1BO60663 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.29□□□□□ -1.88
LMX1BO60663 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC3.29□□□□□ -1.88
LMX1BO60663 RAB11AP2-201ENST00000545905 639 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AC005730.3-201ENST00000583067 366 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.29□□□□□ -1.88
LMX1BO60663 AL117336.2-201ENST00000602435 335 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.29□□□□□ -1.88
LMX1BO60663 AC010680.3-201ENST00000604215 520 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC3.29□□□□□ -1.88
LMX1BO60663 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
LMX1BO60663 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
LMX1BO60663 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.29□□□□□ -1.88
LMX1BO60663 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
LMX1BO60663 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC3.29□□□□□ -1.88
LMX1BO60663 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 RNA5SP258-201ENST00000362750 119 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 SNORD82-201ENST00000365530 70 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 Y_RNA.381-201ENST00000365666 102 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 RNU6-878P-201ENST00000384578 110 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 RNU6-876P-201ENST00000391295 104 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 U3.29-201ENST00000391296 212 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
LMX1BO60663 RPS4XP8-201ENST00000402039 771 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 RPL31P2-201ENST00000413849 377 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.28□□□□□ -1.88
LMX1BO60663 AL139247.1-201ENST00000422768 325 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AC007283.2-201ENST00000424739 197 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 OR51AB1P-201ENST00000429046 620 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC3.28□□□□□ -1.88
LMX1BO60663 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 MTND3P23-201ENST00000431980 347 ntBASIC3.28□□□□□ -1.88
LMX1BO60663 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC3.28□□□□□ -1.88
LMX1BO60663 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms