Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC009570.1-201ENST00000609599 745 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 BX664608.1-201ENST00000610519 487 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 AL357559.1-201ENST00000622228 274 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 AL136313.1-201ENST00000624804 202 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 AL392088.2-201ENST00000637607 285 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
HOXC11O43248 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 AC007823.1-201ENST00000569932 1566 ntBASIC3.75□□□□□ -1.81
HOXC11O43248 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.75□□□□□ -1.81
HOXC11O43248 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
HOXC11O43248 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.75□□□□□ -1.81
HOXC11O43248 AC118273.1-201ENST00000525324 3006 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 Y_RNA.77-201ENST00000362962 107 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 RNY3P13-201ENST00000365542 102 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXC11O43248 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXC11O43248 RN7SKP142-201ENST00000411236 328 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 BX890604.2-201ENST00000427883 474 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC11O43248 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC093156.1-201ENST00000440382 670 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC005094.1-201ENST00000440420 368 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC11O43248 TRBV12-2-201ENST00000489763 344 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC092104.1-201ENST00000497346 1441 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
HOXC11O43248 AC114797.1-201ENST00000514003 728 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC3.74□□□□□ -1.81
HOXC11O43248 AC117532.1-201ENST00000514638 323 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 RNU6-1256P-201ENST00000516539 103 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AP003467.2-201ENST00000520175 319 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC103843.2-201ENST00000530523 682 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AP002453.2-201ENST00000533503 320 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 RPL21P5-201ENST00000554662 472 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC3.74□□□□□ -1.81
HOXC11O43248 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC3.74□□□□□ -1.81
HOXC11O43248 AC108747.1-201ENST00000609508 535 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC004908.3-201ENST00000610248 625 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC008250.2-201ENST00000615261 205 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 AC092140.2-201ENST00000618027 521 ntBASIC3.74□□□□□ -1.81
HOXC11O43248 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
HOXC11O43248 C6orf10-204ENST00000447241 2148 ntAPPRIS P3 TSL 5 BASIC3.74□□□□□ -1.81
HOXC11O43248 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC11O43248 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC11O43248 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
HOXC11O43248 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC11O43248 RNY4P16-201ENST00000364768 94 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 SNORD116-1-201ENST00000384335 95 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 RPS4XP3-201ENST00000398541 413 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 RNU2-8P-201ENST00000410727 190 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 RN7SKP140-201ENST00000411196 284 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 HMGN1P14-201ENST00000412459 517 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 RPS7P13-201ENST00000413955 498 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 RPS15AP12-201ENST00000419498 388 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXC11O43248 AL449983.1-201ENST00000430640 414 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXC11O43248 AC119618.1-201ENST00000434191 222 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AC073063.1-201ENST00000434352 607 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 MTND1P28-201ENST00000435623 950 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXC11O43248 KATNBL1P3-201ENST00000443475 909 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AL035701.1-201ENST00000444038 462 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXC11O43248 AC009237.8-201ENST00000445492 379 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 RBMY2UP-201ENST00000453474 324 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXC11O43248 AL359385.1-201ENST00000456509 365 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXC11O43248 AC010631.1-201ENST00000474150 156 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AC080014.1-201ENST00000496877 1201 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC3.73□□□□□ -1.81
HOXC11O43248 AC100870.1-201ENST00000522035 505 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC11O43248 AC008011.1-201ENST00000545989 227 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 LINC02464-201ENST00000552060 368 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXC11O43248 AC005951.2-201ENST00000576282 495 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AC106796.1-201ENST00000577173 615 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXC11O43248 MIR3186-201ENST00000577404 85 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 CKS1BP3-201ENST00000600888 237 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.73□□□□□ -1.81
HOXC11O43248 AL606834.2-201ENST00000602954 668 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AL391813.2-201ENST00000609113 322 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 MIR7851-201ENST00000610611 160 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AC025594.3-201ENST00000613068 790 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXC11O43248 uc_338.12-201ENST00000616344 181 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 MIR6076-201ENST00000617521 113 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 AC092628.2-201ENST00000622492 339 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.73□□□□□ -1.81
HOXC11O43248 AC244205.2-202ENST00000635781 342 ntBASIC3.73□□□□□ -1.81
HOXC11O43248 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC11O43248 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC11O43248 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
HOXC11O43248 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.73□□□□□ -1.81
HOXC11O43248 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HOXC11O43248 SNORA1.3-201ENST00000384676 136 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
HOXC11O43248 SNORA40.3-201ENST00000390964 122 ntBASIC3.72□□□□□ -1.81
HOXC11O43248 SEPT2P1-201ENST00000419651 180 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms