Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AC109780.2-201ENST00000413467 845 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 LINC01646-201ENST00000420522 682 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC88BA6NC98 UBE2V1P13-201ENST00000436983 439 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 AC093281.2-201ENST00000510153 597 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 CA1-215ENST00000522389 551 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC88BA6NC98 CBX3P2-202ENST00000583365 535 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 HSPE1P14-201ENST00000605812 302 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 AC004241.3-201ENST00000611728 517 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.28□□□□□ -2.04
CCDC88BA6NC98 STMN1P1-201ENST00000617809 440 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 AC116618.1-201ENST00000634617 774 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 MTND5P10-201ENST00000603719 1809 ntBASIC2.28□□□□□ -2.04
CCDC88BA6NC98 RNU2-40P-201ENST00000410833 196 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC093084.1-201ENST00000424233 687 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 UBE2V1P5-201ENST00000440070 405 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC087808.1-201ENST00000520501 361 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 OR5AQ1P-201ENST00000527596 927 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC88BA6NC98 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC006329.2-201ENST00000611491 394 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC140725.3-201ENST00000616193 880 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC091895.1-201ENST00000624494 256 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.27□□□□□ -2.05
CCDC88BA6NC98 AC008568.2-201ENST00000623862 2313 ntBASIC2.27□□□□□ -2.05
CCDC88BA6NC98 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.27□□□□□ -2.05
CCDC88BA6NC98 FDCSP-201ENST00000317987 566 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 HMGB1P26-201ENST00000452520 628 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 HMGN2P16-201ENST00000456802 261 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 RPS15AP17-201ENST00000470598 390 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 RPL23AP41-201ENST00000484754 458 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 AC010625.1-201ENST00000511296 403 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 AP004607.1-201ENST00000524456 203 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 OR4R1P-201ENST00000529879 463 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 AC103993.1-201ENST00000521500 1584 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 RPL31P52-201ENST00000407532 367 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 LSM1P1-201ENST00000438629 273 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 COX6CP14-201ENST00000469580 174 ntBASIC2.26□□□□□ -2.05
CCDC88BA6NC98 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC88BA6NC98 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC88BA6NC98 AC093536.2-201ENST00000565257 1406 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC2.25□□□□□ -2.05
CCDC88BA6NC98 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.25□□□□□ -2.05
CCDC88BA6NC98 HSFY3P-201ENST00000444242 1191 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 HMGN2P18-201ENST00000450680 270 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC88BA6NC98 AC008885.2-201ENST00000509506 930 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 MIR3690-201ENST00000580266 75 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 LLPHP1-201ENST00000603571 367 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 MIR6840-201ENST00000611937 71 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 AC022709.1-201ENST00000615967 87 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 LINC00216-201ENST00000623548 1126 ntBASIC2.25□□□□□ -2.05
CCDC88BA6NC98 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC88BA6NC98 RNU6-1080P-201ENST00000383982 107 ntBASIC2.24□□□□□ -2.05
CCDC88BA6NC98 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
CCDC88BA6NC98 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC2.24□□□□□ -2.05
CCDC88BA6NC98 MIR3122-201ENST00000577243 73 ntBASIC2.24□□□□□ -2.05
CCDC88BA6NC98 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC88BA6NC98 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC88BA6NC98 SNORD114-26-201ENST00000363543 72 ntBASIC2.23□□□□□ -2.05
CCDC88BA6NC98 RNU6-1180P-201ENST00000364935 107 ntBASIC2.23□□□□□ -2.05
CCDC88BA6NC98 Y_RNA.354-201ENST00000365448 111 ntBASIC2.23□□□□□ -2.05
CCDC88BA6NC98 RPS6P14-201ENST00000425165 719 ntBASIC2.23□□□□□ -2.05
CCDC88BA6NC98 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC88BA6NC98 AP002345.1-201ENST00000456493 928 ntBASIC2.23□□□□□ -2.05
CCDC88BA6NC98 HSPE1P3-201ENST00000559254 309 ntBASIC2.23□□□□□ -2.05
CCDC88BA6NC98 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC88BA6NC98 AP000676.4-201ENST00000624659 623 ntBASIC2.23□□□□□ -2.05
CCDC88BA6NC98 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC88BA6NC98 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC2.22□□□□□ -2.05
CCDC88BA6NC98 MORF4L1P7-201ENST00000426038 703 ntBASIC2.22□□□□□ -2.05
CCDC88BA6NC98 RNA5SP220-201ENST00000516298 104 ntBASIC2.22□□□□□ -2.05
CCDC88BA6NC98 RNU6-347P-201ENST00000516658 105 ntBASIC2.22□□□□□ -2.05
CCDC88BA6NC98 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC2.22□□□□□ -2.05
CCDC88BA6NC98 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.05
CCDC88BA6NC98 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.21□□□□□ -2.06
CCDC88BA6NC98 SNORD114-27-201ENST00000363766 70 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 DEFB109C-201ENST00000382575 264 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 DEFB109B-201ENST00000382656 264 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 RNU6-203P-201ENST00000384038 104 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 MIR607-201ENST00000385241 96 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
CCDC88BA6NC98 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC88BA6NC98 FABP5P3-201ENST00000437960 408 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 RNU6-1218P-201ENST00000458990 108 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 AC006390.1-201ENST00000508068 283 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.21□□□□□ -2.06
CCDC88BA6NC98 RPPH1-2P-201ENST00000516688 293 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.21□□□□□ -2.06
CCDC88BA6NC98 AC125611.2-201ENST00000551907 647 ntBASIC2.21□□□□□ -2.06
CCDC88BA6NC98 MTND2P13-201ENST00000577438 1039 ntBASIC2.21□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms