Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 Y_RNA.140-201ENST00000363474 103 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 FO393413.1-201ENST00000402892 195 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 RNU6-77P-201ENST00000410554 91 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AL049765.1-201ENST00000416237 573 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 MTCYBP34-201ENST00000439552 670 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 WASF1P1-201ENST00000447560 1131 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AL139109.1-201ENST00000455491 297 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AP002345.1-201ENST00000456493 928 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 snoU13.4-201ENST00000458916 104 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 LINC02118-201ENST00000505899 407 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC093248.1-201ENST00000513197 417 ntTSL 2 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 PRELID3BP4-201ENST00000515476 571 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 HMGB1P1-201ENST00000522557 636 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AL049838.1-201ENST00000563647 981 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AL157402.2-201ENST00000566394 416 ntTSL 3 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC104581.2-201ENST00000572227 430 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC092474.3-201ENST00000603022 568 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC018618.2-201ENST00000604770 446 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC091834.1-201ENST00000614543 472 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AL590099.1-201ENST00000615276 138 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 AC097372.4-201ENST00000625025 466 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.73□□□□□ -2.13
SCN3AQ9NY46 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC1.73□□□□□ -2.13
SCN3AQ9NY46 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 MTCO1P6-201ENST00000481192 1384 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 CEP57L1-203ENST00000368970 1680 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 HSPE1P11-201ENST00000339579 310 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 Y_RNA.493-201ENST00000384422 102 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 EEF1E1-BLOC1S5-201ENST00000397456 768 ntAPPRIS P1 TSL 3 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AC073264.1-201ENST00000411508 416 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 ZNF92P1Y-201ENST00000415010 1191 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 MORF4L1P6-201ENST00000418771 268 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 OFD1P12Y-201ENST00000427963 1207 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 ZYG11AP1-201ENST00000430329 837 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 OFD1P13Y-201ENST00000431179 1232 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AL645568.3-201ENST00000433683 316 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 UBBP3-201ENST00000445497 241 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AC000061.1-201ENST00000456270 376 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AC092436.1-201ENST00000506450 503 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 Y_RNA.673-201ENST00000516306 88 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.72□□□□□ -2.13
SCN3AQ9NY46 EEF1B2P4-201ENST00000551398 348 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 RPAP2P1-201ENST00000603626 1168 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AL161734.1-201ENST00000609720 557 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 AC073569.3-201ENST00000619055 682 ntBASIC1.72□□□□□ -2.13
SCN3AQ9NY46 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AL137003.2-201ENST00000606924 2538 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 HMGB3P2-201ENST00000411913 584 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 HMGB3P31-201ENST00000413333 595 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 SPA17P1-201ENST00000416656 452 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AL356320.2-201ENST00000417263 507 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 SNORD13-201ENST00000459299 104 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC104233.2-201ENST00000518922 414 ntTSL 3 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 NBEAP1-201ENST00000554452 979 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AP001330.4-201ENST00000604350 154 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 RNU6-1226P-201ENST00000384317 107 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 RNA5SP213-201ENST00000391031 106 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 ZNF736P10Y-201ENST00000403990 1110 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 RNA5SP489-201ENST00000410986 109 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AL121882.1-201ENST00000422893 417 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 RPL7P37-201ENST00000425095 738 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 RPL23AP58-201ENST00000440453 469 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC107393.1-201ENST00000512403 346 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AP000790.1-201ENST00000528891 737 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 GNAI2P1-201ENST00000541815 315 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC022511.1-201ENST00000544089 476 ntTSL 2 BASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AC044913.1-201ENST00000557200 430 ntBASIC1.71□□□□□ -2.14
SCN3AQ9NY46 AL161629.2-201ENST00000615347 275 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms