Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AC125611.2-201ENST00000551907 647 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AC012182.1-201ENST00000570133 895 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AC027514.2-201ENST00000591014 637 ntTSL 3 BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AL022099.1-201ENST00000604551 712 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AF250324.2-201ENST00000608299 610 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AL590282.1-201ENST00000610379 1136 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AC093838.1-201ENST00000613014 469 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 U4.5-201ENST00000617137 123 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 MIR6130-201ENST00000619419 109 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 CNOT10-206ENST00000454516 2760 ntTSL 2 BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 AC007656.2-201ENST00000624902 4547 ntBASIC3.89□□□□□ -1.79
PAAF1Q9BRP4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 ANKRD36BP1-202ENST00000604892 1417 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 MIR708-201ENST00000390708 88 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AL109755.1-201ENST00000401791 649 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 HMGB3P20-201ENST00000417997 600 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 EIF1P1-201ENST00000421436 341 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 ATP5JP1-201ENST00000431631 322 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 MTND3P21-201ENST00000433774 331 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 USP9YP7-201ENST00000436723 430 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC093392.2-201ENST00000450682 337 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 CYCSP35-201ENST00000451978 304 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 USP9YP32-201ENST00000452432 430 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC010285.1-201ENST00000470580 392 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC126182.1-201ENST00000478134 357 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 UBE2Q2P9-201ENST00000490086 202 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 HSPD1P15-201ENST00000505573 1122 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 HMGB1P29-201ENST00000505659 499 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 KLHL2P1-201ENST00000508691 521 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC004062.1-201ENST00000509926 645 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC113145.1-201ENST00000522408 412 ntTSL 5 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 MTCYBP41-201ENST00000528913 1123 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 OR5V1-216ENST00000543825 1048 ntAPPRIS P1 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC124947.2-202ENST00000552735 133 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 SUB1P2-201ENST00000556401 297 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC087481.2-201ENST00000565492 330 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 MIR3167-201ENST00000579623 85 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AL450472.3-201ENST00000615578 367 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AC091905.1-201ENST00000624400 311 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 AL136313.1-201ENST00000624804 202 ntBASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
PAAF1Q9BRP4 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 LDHAL6CP-202ENST00000550738 3224 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 Y_RNA.1-201ENST00000352915 104 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 RNU4-1-201ENST00000363925 141 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 RNU6-173P-201ENST00000364215 104 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 RNU6-282P-201ENST00000365357 103 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 MIR181A1-201ENST00000385026 110 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 RNU6-882P-201ENST00000391025 103 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 PTMAP5-201ENST00000393073 333 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 FGFR1OP2P1-201ENST00000395943 500 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 RPL17P50-201ENST00000396131 546 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 MIR548F1-201ENST00000408667 84 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 RN7SKP177-201ENST00000410567 355 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 RNA5SP107-201ENST00000411358 122 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 EI24P1-201ENST00000416584 867 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 AC097713.2-201ENST00000430199 356 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 MTCO2P11-201ENST00000431069 680 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 HMGN2P21-201ENST00000447764 270 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 AC025518.1-201ENST00000479856 347 ntBASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 ATP6V1G3-204ENST00000489986 449 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
PAAF1Q9BRP4 AC079382.1-201ENST00000493346 557 ntBASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms