Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR4275-201ENST00000636486 87 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 AC011460.1-201ENST00000636268 1834 ntBASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CCDC3Q9BQI4 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC005183.1-201ENST00000603687 1979 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 RNU4-21P-201ENST00000362802 126 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 RNU6-853P-201ENST00000364306 107 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 RNU6-882P-201ENST00000391025 103 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 RNU6-754P-201ENST00000391166 107 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC063979.1-201ENST00000415539 377 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC004866.2-201ENST00000438285 481 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC008264.1-201ENST00000447612 367 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 RPL36AP33-201ENST00000450395 310 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 RPS27AP8-201ENST00000452665 445 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 KATNBL1P6-201ENST00000453433 915 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 ZNF114P1-201ENST00000453500 292 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC116337.2-201ENST00000477662 156 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AL049873.1-201ENST00000480540 376 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC093534.1-201ENST00000504977 132 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC105313.1-201ENST00000509121 353 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 LINC02315-201ENST00000515218 696 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AL356057.1-201ENST00000533798 831 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC034268.2-201ENST00000571784 482 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 ROCK1P1-201ENST00000573767 549 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC083760.1-201ENST00000589621 670 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AL590229.1-201ENST00000603497 542 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AL355810.1-201ENST00000614629 552 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AL590240.3-201ENST00000621416 943 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC009268.2-201ENST00000621925 457 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 AC091931.1-201ENST00000623488 728 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 MTND4P4-201ENST00000439033 1366 ntBASIC3.24□□□□□ -1.89
CCDC3Q9BQI4 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AP000567.1-201ENST00000406413 156 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 RNU4-47P-201ENST00000410876 114 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 RNU2-71P-201ENST00000411395 189 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AL359704.1-201ENST00000411586 781 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 RPL7P8-201ENST00000411964 730 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 B3GALNT1P1-201ENST00000420569 975 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC002075.2-201ENST00000425207 252 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 RPL21P66-201ENST00000426566 466 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 HMGB1P12-201ENST00000438594 598 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 TRIM60P18-201ENST00000441518 828 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 SNRPFP4-201ENST00000456366 242 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 snoU13.4-201ENST00000458916 104 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AP001486.1-201ENST00000463339 476 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 RPL21P104-201ENST00000464143 478 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC114967.1-201ENST00000504890 259 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC097521.1-201ENST00000505488 567 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 KLHL2P1-201ENST00000508691 521 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 RNU6-201P-201ENST00000517100 61 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC004024.1-201ENST00000549244 247 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC012435.1-202ENST00000568772 240 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC015917.1-201ENST00000579654 510 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 PIGPP4-201ENST00000584447 307 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 AC103710.4-201ENST00000609301 899 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 RNVU1-4-201ENST00000612985 164 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 CU459211.1-201ENST00000635667 749 ntBASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.23□□□□□ -1.89
CCDC3Q9BQI4 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 94.9 ms