Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 BX890604.2-201ENST00000427883 474 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 GCA-203ENST00000429691 824 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 VDAC1P3-201ENST00000434069 851 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC090774.1-201ENST00000435925 246 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC004866.2-201ENST00000438285 481 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 HMGB1P12-201ENST00000438594 598 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 NOTCH2P1-201ENST00000443481 624 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 SSXP1-201ENST00000453640 473 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC093110.1-201ENST00000456363 602 ntTSL 2 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 CFTRP1-201ENST00000456646 183 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 TPTE2P5-203ENST00000458118 728 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 TPT1P7-201ENST00000458300 517 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 SNORD42A-201ENST00000459584 64 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC093689.1-203ENST00000505967 299 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 ARL2BPP4-201ENST00000506854 471 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 NDUFB4P2-201ENST00000509515 391 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 SLC7A11-AS1-201ENST00000510066 817 ntTSL 2 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 RNU2-46P-201ENST00000517038 113 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 SNORA31.22-201ENST00000517204 135 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC103783.1-201ENST00000520506 373 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AP001646.3-201ENST00000526305 446 ntTSL 2 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 DEFB108D-201ENST00000527787 222 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 MIR3690-201ENST00000580266 75 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC002546.2-201ENST00000585537 584 ntTSL 3 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC068790.3-201ENST00000602988 553 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AP001330.4-201ENST00000604350 154 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 RNU1-30P-201ENST00000606575 163 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 BX664608.1-201ENST00000610519 487 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC011939.3-201ENST00000613686 466 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AL121772.2-201ENST00000614331 297 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC004696.1-201ENST00000614345 607 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC008250.2-201ENST00000615261 205 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC092656.1-203ENST00000624134 423 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AC010149.2-201ENST00000637608 315 ntBASIC3.06□□□□□ -1.92
NKX3-1Q99801 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.06□□□□□ -1.92
NKX3-1Q99801 AL138713.1-201ENST00000624026 2130 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 OSBPL9P4-201ENST00000371707 1800 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
NKX3-1Q99801 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 RNA5SP124-201ENST00000362739 110 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 RNY4P16-201ENST00000364768 94 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 RNU6-1181P-201ENST00000384191 106 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 RNU6-248P-201ENST00000410720 107 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 RNU6-195P-201ENST00000411352 109 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 RNU6-516P-201ENST00000411381 104 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 RPS3AP3-201ENST00000411933 242 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AL158839.1-201ENST00000413943 575 ntTSL 2 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 CDK8P2-201ENST00000415020 547 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 RPL21P32-201ENST00000419877 477 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC013402.2-201ENST00000424257 437 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AL033539.1-201ENST00000427775 743 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 USP9YP14-201ENST00000430663 563 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 BX679664.1-201ENST00000434429 253 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC024082.2-201ENST00000434771 238 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 RPL26P6-201ENST00000440913 438 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 MTND6P13-201ENST00000443510 523 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 MTCO2P7-201ENST00000446518 666 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 RGS5-217ENST00000451759 835 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AL033528.1-201ENST00000453780 140 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 snoU13.4-201ENST00000458916 104 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 RPL21P104-201ENST00000464143 478 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 LARP1BP2-201ENST00000486594 519 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC093278.1-201ENST00000494700 600 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC091435.1-201ENST00000505442 584 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 MLLT10P2-201ENST00000506434 249 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 MTND3P5-201ENST00000512798 333 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AP003467.2-201ENST00000520175 319 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC026333.2-201ENST00000542164 106 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 TIMM9-207ENST00000555930 448 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 AL352979.2-201ENST00000556988 366 ntTSL 3 BASIC3.05□□□□□ -1.92
NKX3-1Q99801 TGIF1P1-201ENST00000558095 802 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AC012182.1-201ENST00000570133 895 ntBASIC3.05□□□□□ -1.92
NKX3-1Q99801 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC3.05□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 98 ms