Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 AC103710.2-202ENST00000641454 2853 ntBASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
CCDC28AQ8IWP9 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 Y_RNA.38-201ENST00000362617 102 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 RNY3P3-201ENST00000363816 102 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 KLRC3-201ENST00000381903 798 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 MIR493-201ENST00000385254 89 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 ZSCAN12P1-201ENST00000406489 419 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 RNU2-29P-201ENST00000410423 189 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 SNRPFP1-201ENST00000414761 252 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AL356134.1-201ENST00000419815 373 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 DDX39BP1-205ENST00000422507 192 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 CHEK2P5-201ENST00000423877 246 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AL451139.1-201ENST00000434718 346 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 RPL21P133-201ENST00000443666 476 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 NFU1P2-201ENST00000448700 469 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 PPIAP20-201ENST00000449839 135 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 HMGN2P16-201ENST00000456802 261 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 CEACAMP4-201ENST00000457676 421 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 LINC01038-201ENST00000457858 428 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 RN7SL93P-201ENST00000463035 293 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 RN7SL330P-201ENST00000469709 307 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AC041039.1-201ENST00000485656 536 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 PRDX4P1-201ENST00000507189 574 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 PGAM1P13-201ENST00000507497 754 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 RN7SKP219-201ENST00000516825 296 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 IGHVII-44-2-201ENST00000517728 250 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AC078778.1-201ENST00000547177 735 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 ADI1P3-201ENST00000549509 470 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AC087477.3-201ENST00000559214 552 ntTSL 4 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AP002360.3-201ENST00000607673 710 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AL121612.2-201ENST00000612261 482 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AL512624.1-201ENST00000613638 469 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AL359547.2-201ENST00000615810 418 ntBASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
CCDC28AQ8IWP9 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AL139276.1-201ENST00000311910 1001 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 RNA5SP183-201ENST00000362452 119 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-1287P-201ENST00000362914 107 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 RNU6-1060P-201ENST00000384664 107 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 PPIAP31-201ENST00000405422 495 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 DPPA2P3-201ENST00000411853 655 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 Z85995.1-201ENST00000415547 335 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC245054.1-201ENST00000420944 258 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 MTCYBP8-201ENST00000422855 651 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC091390.3-201ENST00000426478 338 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 TAAR7P-201ENST00000436141 242 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 MTND4P25-201ENST00000441039 533 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 WASF1P1-201ENST00000447560 1131 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AL162395.1-201ENST00000457882 422 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC046136.1-201ENST00000459855 533 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 RPL23AP62-201ENST00000463396 453 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 BTF3L4P4-201ENST00000506381 449 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC104806.1-201ENST00000508720 308 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC098591.2-201ENST00000510152 315 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 RNA5SP401-201ENST00000515920 127 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 RNU4ATAC8P-201ENST00000516196 109 ntBASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC3.68□□□□□ -1.82
CCDC28AQ8IWP9 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms