Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 FTH1P9-201ENST00000513251 355 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 RNU2-69P-201ENST00000516061 100 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 RNU6-307P-201ENST00000516743 106 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX4Q06945 IL7-206ENST00000520269 456 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX4Q06945 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX4Q06945 DEFB130C-201ENST00000528518 237 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SOX4Q06945 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC5.08□□□□□ -1.6
SOX4Q06945 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC5.08□□□□□ -1.6
SOX4Q06945 AC023157.2-201ENST00000540596 141 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.08□□□□□ -1.6
SOX4Q06945 AC007375.1-201ENST00000554513 578 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 AL359219.2-201ENST00000555184 348 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 HSBP1P1-201ENST00000555205 166 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 AC093591.2-201ENST00000565254 3843 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.08□□□□□ -1.6
SOX4Q06945 AC005899.2-201ENST00000584353 90 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX4Q06945 MIR378J-201ENST00000611988 109 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 AP001005.3-201ENST00000622049 129 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 PROX1-AS1-244ENST00000630355 599 ntTSL 5 BASIC5.08□□□□□ -1.6
SOX4Q06945 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SOX4Q06945 AC100778.3-201ENST00000580060 1750 ntBASIC5.08□□□□□ -1.6
SOX4Q06945 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX4Q06945 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SOX4Q06945 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
SOX4Q06945 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX4Q06945 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 SNORD113.2-201ENST00000364166 89 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 SMIM11P1-201ENST00000369586 178 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 RNU6-1062P-201ENST00000383908 107 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 RNU6-472P-201ENST00000384299 107 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 RNU6-55P-201ENST00000411092 107 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AC007738.1-201ENST00000413892 348 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 RPEP3-201ENST00000425462 676 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 RPL23AP1-201ENST00000428990 471 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 RPS15AP10-201ENST00000432472 382 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX4Q06945 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX4Q06945 AC099799.1-201ENST00000439809 192 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 RPL21P2-201ENST00000440049 481 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AC012070.1-201ENST00000442062 427 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX4Q06945 AC009901.1-201ENST00000506703 541 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX4Q06945 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX4Q06945 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 RNU6-27P-201ENST00000516146 107 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 Y_RNA.680-201ENST00000516441 93 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 RNA5SP230-201ENST00000517039 122 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 HMGN1P28-201ENST00000521340 364 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX4Q06945 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC5.07□□□□□ -1.6
SOX4Q06945 AC125232.2-201ENST00000592457 143 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AC006272.2-201ENST00000594725 163 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX4Q06945 AL670379.6-201ENST00000603753 252 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AL670379.1-201ENST00000604752 252 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AL670379.5-201ENST00000605253 252 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AL670379.8-201ENST00000605353 252 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AC004805.2-201ENST00000605382 482 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AL670379.7-201ENST00000605823 252 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AL161423.1-201ENST00000613700 262 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 AL589994.2-201ENST00000621124 579 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 TEX30-201ENST00000376019 1689 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX4Q06945 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.07□□□□□ -1.6
SOX4Q06945 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.07□□□□□ -1.6
SOX4Q06945 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
SOX4Q06945 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 ZNF345-213ENST00000589046 3120 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
SOX4Q06945 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.07□□□□□ -1.6
SOX4Q06945 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SOX4Q06945 FAM71D-211ENST00000612183 1790 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
SOX4Q06945 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
SOX4Q06945 Y_RNA.106-201ENST00000363189 100 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 RNU6-715P-201ENST00000365204 103 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 SNORA41-201ENST00000384675 132 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 RNU6-713P-201ENST00000384761 107 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 RNA5SP397-201ENST00000391323 118 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 MIR1252-201ENST00000408861 65 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC011933.1-201ENST00000413334 321 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 RPL21P24-201ENST00000413752 448 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 MRPS18CP6-201ENST00000423587 223 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX4Q06945 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC5.06□□□□□ -1.6
SOX4Q06945 FABP5P13-201ENST00000452144 328 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 RNU6-1132P-201ENST00000459214 107 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC087884.1-201ENST00000469738 328 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 RPL36AP41-201ENST00000493820 306 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 CEACAMP10-202ENST00000495431 496 ntBASIC5.06□□□□□ -1.6
SOX4Q06945 AC114801.2-201ENST00000503825 781 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms