Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 NANOGP10-201ENST00000453325 895 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 C1DP4-201ENST00000455429 424 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.13□□□□□ -1.75
FOXN3O00409 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC4.13□□□□□ -1.75
FOXN3O00409 RPS4XP13-201ENST00000483219 789 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 VN1R105P-201ENST00000486595 910 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 AL049874.1-201ENST00000489560 388 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 AC083800.1-201ENST00000490594 246 ntAPPRIS P1 TSL 3 BASIC4.13□□□□□ -1.75
FOXN3O00409 RN7SKP289-201ENST00000517244 295 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 AC022616.3-201ENST00000523940 148 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 FAM60DP-201ENST00000524174 632 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXN3O00409 AC007684.1-201ENST00000609671 477 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 MIR486-1-201ENST00000612171 68 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 AL391261.4-201ENST00000616012 481 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
FOXN3O00409 MIR6500-201ENST00000622700 86 ntBASIC4.13□□□□□ -1.75
FOXN3O00409 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXN3O00409 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXN3O00409 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
FOXN3O00409 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
FOXN3O00409 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXN3O00409 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
FOXN3O00409 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC4.13□□□□□ -1.75
FOXN3O00409 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.12□□□□□ -1.75
FOXN3O00409 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXN3O00409 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
FOXN3O00409 AC009812.4-201ENST00000569134 1805 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXN3O00409 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.12□□□□□ -1.75
FOXN3O00409 SPRR2C-201ENST00000290702 219 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 MS4A5-201ENST00000300190 722 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXN3O00409 RNU5A-1-201ENST00000362698 116 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 RNU6-223P-201ENST00000362830 107 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 Y_RNA.248-201ENST00000364501 109 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 RNU6-282P-201ENST00000365357 103 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXN3O00409 RNU6-213P-201ENST00000384051 104 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 RNU1-89P-201ENST00000384592 164 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 HMGN2P8-201ENST00000391458 268 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 GSTA9P-201ENST00000406231 611 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 TXNP7-201ENST00000406296 293 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 RPL30P16-201ENST00000419341 429 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 PIGFP2-201ENST00000421400 651 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AL138760.1-201ENST00000423283 435 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXN3O00409 AC137499.1-201ENST00000427602 88 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 MTATP6P4-201ENST00000427725 675 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC133104.1-201ENST00000429100 218 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXN3O00409 SNORA71B-202ENST00000439232 272 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC005094.1-201ENST00000440420 368 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXN3O00409 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXN3O00409 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXN3O00409 AL136380.1-201ENST00000447970 162 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 TPT1P12-201ENST00000448968 492 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXN3O00409 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXN3O00409 RN7SL385P-201ENST00000468873 276 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC007537.2-201ENST00000472093 511 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC084198.1-201ENST00000477747 402 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 TRBV12-2-201ENST00000489763 344 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC4.12□□□□□ -1.75
FOXN3O00409 AC114967.1-201ENST00000504890 259 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
FOXN3O00409 AC010493.1-201ENST00000513479 292 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXN3O00409 ERHP1-201ENST00000523006 310 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.12□□□□□ -1.75
FOXN3O00409 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.12□□□□□ -1.75
FOXN3O00409 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC4.12□□□□□ -1.75
FOXN3O00409 MED28P6-201ENST00000558776 231 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC006960.3-201ENST00000561845 705 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AL845331.3-202ENST00000562856 261 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC120057.2-201ENST00000571520 271 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 MIR3167-201ENST00000579623 85 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 BNIP3P30-201ENST00000601184 574 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 Z84480.1-201ENST00000605131 311 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AL592436.1-201ENST00000605135 558 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 BRDTP1-201ENST00000605735 677 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AL355810.1-201ENST00000614629 552 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 AC079684.1-201ENST00000621405 437 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 OR5H6-203ENST00000642105 978 ntBASIC4.12□□□□□ -1.75
FOXN3O00409 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXN3O00409 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXN3O00409 ZNF883-201ENST00000619044 2051 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
FOXN3O00409 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
FOXN3O00409 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC4.12□□□□□ -1.75
FOXN3O00409 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXN3O00409 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXN3O00409 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC4.11□□□□□ -1.75
FOXN3O00409 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXN3O00409 SNORD56.2-201ENST00000363242 71 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 RNA5SP283-201ENST00000365604 119 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AL138878.1-201ENST00000405131 347 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 AC008850.1-201ENST00000427546 362 ntBASIC4.11□□□□□ -1.75
FOXN3O00409 RPL7L1P10-201ENST00000427790 463 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms