Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 snoU13.1-201ENST00000459157 104 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 RPL21P8-201ENST00000465083 535 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 DYNLL1P5-201ENST00000467158 270 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AC104472.2-201ENST00000469035 601 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AC010655.3-201ENST00000478818 450 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AC135721.1-201ENST00000497954 479 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 HIGD1AP13-201ENST00000509878 289 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-1016P-201ENST00000516689 94 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-1092P-201ENST00000516955 87 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 RN7SL690P-201ENST00000582087 240 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AC009229.3-201ENST00000608056 282 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AC011890.2-201ENST00000613393 294 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AC010378.1-201ENST00000619270 362 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 PLCE1P1-201ENST00000622094 305 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AC091925.2-201ENST00000625059 256 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 AL122126.1-201ENST00000546905 1318 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 SMG1P6-201ENST00000532337 2930 ntBASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 CCDC82-202ENST00000423339 1878 ntAPPRIS P2 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.89□□□□□ -1.47
CHMP3Q9Y3E7 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AC107068.1-201ENST00000563286 4218 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 SDCBP-213ENST00000630925 2076 ntTSL 5 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.252-201ENST00000364556 101 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.476-201ENST00000384347 108 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 SNORD3H-201ENST00000384486 214 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 RN7SKP159-201ENST00000410657 292 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 RNU4-6P-201ENST00000410804 122 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AL590632.1-201ENST00000424289 371 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 RPL36AP6-201ENST00000435770 321 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 HMGB1P12-201ENST00000438594 598 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 Z95327.1-201ENST00000446082 482 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AC053481.1-201ENST00000467217 306 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 RN7SL481P-201ENST00000477764 299 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-635P-201ENST00000516651 102 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AC124068.1-201ENST00000563131 678 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 SMG1P7-203ENST00000573141 619 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AC000374.1-201ENST00000434698 1745 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 AL445437.1-201ENST00000623157 3087 ntBASIC5.88□□□□□ -1.47
CHMP3Q9Y3E7 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-238P-201ENST00000363313 106 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.574-201ENST00000384766 95 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 RN7SKP267-201ENST00000410381 285 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 HNRNPDLP1-201ENST00000412834 550 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AC007738.1-201ENST00000413892 348 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AC140479.3-201ENST00000418944 1126 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 ATG3P1-201ENST00000419507 911 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 HMGB3P21-201ENST00000452483 547 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 RPL36AP13-201ENST00000457490 317 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 RN7SL860P-201ENST00000473738 223 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AF213884.1-201ENST00000488102 463 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AC023424.1-201ENST00000496058 459 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AC110794.1-201ENST00000505816 425 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 OR51K1P-201ENST00000510214 950 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AC025475.1-201ENST00000512939 487 ntTSL 3 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 RNU6-120P-201ENST00000516077 103 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 Y_RNA.670-201ENST00000516255 105 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 RPL23AP53-201ENST00000521854 457 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AL355076.2-201ENST00000555736 544 ntTSL 5 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AC008521.1-201ENST00000587471 187 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 AC018889.1-201ENST00000605372 397 ntBASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
CHMP3Q9Y3E7 NEAT1-202ENST00000501122 22743 ntBASIC5.87□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 95.9 ms