Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC097468.3-201ENST00000607956 456 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AC002076.2-201ENST00000617362 122 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 DLEU1_2.1-201ENST00000617920 342 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 MIR8057-201ENST00000620957 69 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AC002550.2-201ENST00000621246 394 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AC018692.3-201ENST00000623929 123 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AC092447.10-201ENST00000620607 1652 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AL513185.3-201ENST00000433335 1300 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 TAS2R14-202ENST00000537503 1858 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 MUC7-203ENST00000456088 2479 ntAPPRIS P2 TSL 4 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 RNU1-75P-201ENST00000347264 129 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 RNU6-359P-201ENST00000365466 108 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 SNORA7.4-201ENST00000384249 137 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AL356421.1-201ENST00000403255 413 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 BEND7P1-201ENST00000422058 457 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AL353678.1-201ENST00000422735 741 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 CETN4P-201ENST00000432407 469 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 ISCA1P2-201ENST00000438679 421 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 RPL36AP33-201ENST00000450395 310 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AL133217.1-201ENST00000450980 425 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 MTUS2-AS2-203ENST00000452602 651 ntTSL 3 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 SNORD121B-201ENST00000458838 81 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AP002884.2-201ENST00000471647 395 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC072039.1-201ENST00000477611 581 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC097467.3-212ENST00000512269 568 ntTSL 3 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC010265.1-201ENST00000513509 211 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 SNORD59.2-201ENST00000516873 68 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 RNU6-528P-201ENST00000516926 100 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 RN7SKP57-201ENST00000517248 293 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 OR56A5-202ENST00000532411 942 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 KLRF2-201ENST00000535540 731 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 MED28P6-201ENST00000558776 231 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 LINC01584-203ENST00000567231 646 ntTSL 5 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 LINC01909-202ENST00000584919 815 ntTSL 3 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 CLPTM1LP1-201ENST00000604519 484 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC004223.4-201ENST00000612426 332 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 MTND4P16-201ENST00000466108 1367 ntBASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 CCDC82-201ENST00000278520 2941 ntAPPRIS P2 TSL 5 BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.45□□□□□ -1.86
CPSF3Q9UKF6 AC110774.1-201ENST00000623567 2018 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC093010.3-201ENST00000570269 15214 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 RNA5SP374-201ENST00000362939 125 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 RNU6-882P-201ENST00000391025 103 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 SNORA11.1-201ENST00000408133 129 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AL512649.1-201ENST00000428997 581 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 MTATP6P17-201ENST00000431030 672 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 LINC01688-201ENST00000435492 259 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 MTND1P26-201ENST00000440488 538 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 RPS3AP12-201ENST00000443616 753 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC115115.1-201ENST00000449927 248 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AP001025.2-201ENST00000490908 477 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 RNU6-678P-201ENST00000516832 109 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 ERHP1-201ENST00000523006 310 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 LINC02460-201ENST00000543558 536 ntTSL 4 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC034268.2-201ENST00000571784 482 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 MIR544B-201ENST00000582372 78 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC008507.1-201ENST00000587506 734 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC013444.2-201ENST00000603317 787 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AL022099.1-201ENST00000604551 712 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 BCRP9-201ENST00000605312 388 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC012443.1-201ENST00000605605 231 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC103710.4-201ENST00000609301 899 ntBASIC3.44□□□□□ -1.86
CPSF3Q9UKF6 AC009570.1-201ENST00000609599 745 ntBASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 369 ms