Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 RPS20P20-201ENST00000460498 340 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AC231760.1-201ENST00000498002 260 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 ARL2BPP4-201ENST00000506854 471 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 MTND4P2-201ENST00000507767 1203 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 NDUFB4P2-201ENST00000509515 391 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 TTC39CP1-201ENST00000512513 755 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 RNU6-390P-201ENST00000516259 103 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 RNU6-1256P-201ENST00000516539 103 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 RNA5SP337-201ENST00000517007 109 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 SUMO2P20-201ENST00000520803 283 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AP001804.3-201ENST00000525146 880 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 CARD18-201ENST00000526823 627 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 HIGD1AP5-201ENST00000529959 259 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AP002453.2-201ENST00000533503 320 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AL136146.2-201ENST00000534594 494 ntTSL 2 BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 NACA-211ENST00000548563 827 ntTSL 5 BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AC090877.1-201ENST00000561418 344 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 MIR5096-201ENST00000583713 70 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AC008277.2-201ENST00000605196 797 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 RNU4-89P-201ENST00000607443 133 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 STARD13-AS-221ENST00000608197 604 ntTSL 5 BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AC009570.1-201ENST00000609599 745 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AC103710.1-201ENST00000610003 901 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 UBE2Q2P2-203ENST00000613592 761 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 AP001506.1-201ENST00000615444 211 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 HOTAIRM1_2.1-201ENST00000616712 215 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 FAP-201ENST00000188790 2780 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 PWAR6-201ENST00000552334 4618 ntBASIC3.25□□□□□ -1.89
CHMP1AQ9HD42 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RNU6-511P-201ENST00000363496 107 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 OR6C69P-201ENST00000394268 893 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RPL7P60-201ENST00000397636 735 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 MIR1290-201ENST00000408735 78 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AL451054.2-201ENST00000420896 202 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC007283.2-201ENST00000424739 197 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RPL7L1P10-201ENST00000427790 463 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 NUTF2P3-201ENST00000448540 384 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 UTAT33-202ENST00000449177 565 ntTSL 2 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 GAPDHP17-201ENST00000449858 1001 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 MTND2P24-201ENST00000453434 806 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RPS29P33-201ENST00000456717 146 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RNA5SP310-201ENST00000459084 116 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RN7SL459P-201ENST00000481078 302 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC079140.3-201ENST00000511111 550 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 CASP1P1-201ENST00000526345 212 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC022690.1-201ENST00000526681 550 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 MIR100HG-221ENST00000534297 572 ntTSL 4 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 ARL2BPP2-201ENST00000550907 489 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AL135746.1-201ENST00000554205 547 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 NDUFAF4P1-201ENST00000559425 519 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC023575.1-201ENST00000580510 358 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC040904.1-201ENST00000590850 223 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC064872.1-201ENST00000604823 1072 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC090578.1-201ENST00000604955 591 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 DLEU2_1.1-201ENST00000612089 120 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 DLEU2_1.2-201ENST00000614667 120 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC3.24□□□□□ -1.89
CHMP1AQ9HD42 AC090740.1-201ENST00000623193 2262 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 RNA5SP443-201ENST00000363083 132 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 RNU6-1284P-201ENST00000363701 100 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 Y_RNA.201-201ENST00000364052 96 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 RNY4P34-201ENST00000364779 95 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 Y_RNA.359-201ENST00000365498 102 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 RPL23AP32-201ENST00000395315 459 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 MRPL42P2-201ENST00000403169 426 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 RNU2-62P-201ENST00000410868 191 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 RNU6-195P-201ENST00000411352 109 ntBASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.23□□□□□ -1.89
CHMP1AQ9HD42 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms