Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 PDSS1P1-201ENST00000422953 1114 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 RWDD4P2-201ENST00000426392 563 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AL451060.1-203ENST00000431307 362 ntTSL 3 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 IFNA20P-201ENST00000436840 528 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 RPL26P6-201ENST00000440913 438 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AL162388.1-201ENST00000450912 352 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AL590639.1-201ENST00000456484 337 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 HMGB3P30-201ENST00000457863 606 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 RPL7P19-201ENST00000469948 618 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 ALDH7A1P3-201ENST00000492517 345 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC117522.3-201ENST00000507974 584 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC098591.2-201ENST00000510152 315 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC005908.2-201ENST00000546078 530 ntTSL 3 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC106782.4-201ENST00000568264 210 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 MIR4424-201ENST00000585257 86 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC243960.4-201ENST00000600532 288 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AL670379.4-201ENST00000605279 254 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AL158032.1-201ENST00000605401 106 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC009233.1-201ENST00000616477 371 ntBASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 TMEM71-210ENST00000523829 1974 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
TRIM39Q9HCM9 NOL8P1-201ENST00000508336 3529 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 OR56B2P-202ENST00000641377 2453 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 PRO1804-201ENST00000623780 2050 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AP004289.2-201ENST00000444413 1457 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RNU6-550P-201ENST00000391057 101 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RNU6ATAC16P-201ENST00000408591 138 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RNA5SP146-201ENST00000410743 123 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 Y_RNA.615-201ENST00000410769 117 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 MTND3P8-201ENST00000412909 339 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RPL23AP1-201ENST00000428990 471 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC068287.1-201ENST00000430283 295 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RPL21P112-201ENST00000434403 463 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 snoU13.1-201ENST00000459157 104 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 HSPE1P6-201ENST00000479457 291 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC108860.1-201ENST00000484521 383 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RNU6-123P-201ENST00000516163 102 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 Y_RNA.675-201ENST00000516389 149 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RN7SKP60-201ENST00000516985 239 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RNU6-685P-201ENST00000517088 95 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RN7SKP256-201ENST00000517201 314 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 IGKV2D-23-201ENST00000518179 286 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC021736.1-201ENST00000521143 563 ntTSL 4 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC107953.1-201ENST00000522216 297 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AP000827.1-201ENST00000527814 258 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC084783.1-201ENST00000565846 910 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC015912.2-201ENST00000571053 181 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC209154.1-201ENST00000582156 337 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC008521.1-201ENST00000587471 187 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AC067852.3-201ENST00000589177 561 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 MIR6748-201ENST00000610433 71 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 AL158196.1-201ENST00000616786 434 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 ATP8A2P2-201ENST00000437678 1568 ntBASIC4.52□□□□□ -1.69
TRIM39Q9HCM9 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 SENP7-204ENST00000394085 1483 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
TRIM39Q9HCM9 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 91.6 ms