Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 PLCZ1-209ENST00000539875 1398 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
CHFRQ96EP1 AC022031.1-201ENST00000585985 2593 ntBASIC4.37□□□□□ -1.71
CHFRQ96EP1 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.37□□□□□ -1.71
CHFRQ96EP1 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC4.37□□□□□ -1.71
CHFRQ96EP1 EOGT-210ENST00000615922 1931 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 Y_RNA.25-201ENST00000362528 102 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 Y_RNA.188-201ENST00000363952 111 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 OR52E6-202ENST00000379946 954 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 C9orf92-201ENST00000380683 359 ntAPPRIS P2 TSL 3 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 RNU6-356P-201ENST00000384140 107 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 RNU6-1026P-201ENST00000384465 108 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 RN7SKP202-201ENST00000410439 330 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 RNU4-14P-201ENST00000410858 122 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 Y_RNA.618-201ENST00000410949 107 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 CYCSP19-201ENST00000411715 316 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 RBM6-203ENST00000421682 684 ntTSL 2 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 RPL7P2-201ENST00000427639 268 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 RPL23AP25-201ENST00000430973 463 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 RPL32P28-201ENST00000443577 397 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 CEACAMP4-201ENST00000457676 421 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 HMGB3P30-201ENST00000457863 606 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 RNU7-152P-201ENST00000458982 64 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 MEMO1P3-201ENST00000459811 302 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 VN1R105P-201ENST00000486595 910 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC010280.3-201ENST00000515504 587 ntTSL 4 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 RNU6-559P-201ENST00000516151 98 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 SNORA48.10-201ENST00000516965 160 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 RNU1-45P-201ENST00000517191 141 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC022634.1-201ENST00000520765 532 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 AL163153.1-201ENST00000554223 283 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 RPL23AP97-201ENST00000568955 471 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 MIR4286-201ENST00000580651 93 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AP000654.2-201ENST00000605633 586 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC4.36□□□□□ -1.71
CHFRQ96EP1 DLEU1_2.1-201ENST00000617920 342 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 U4.1-201ENST00000620349 87 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC005086.4-201ENST00000623065 213 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 AC007546.2-201ENST00000623996 360 ntBASIC4.36□□□□□ -1.71
CHFRQ96EP1 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CHFRQ96EP1 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
CHFRQ96EP1 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
CHFRQ96EP1 NUP35-201ENST00000295119 1633 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CHFRQ96EP1 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
CHFRQ96EP1 AC007685.1-201ENST00000329806 452 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 Y_RNA.28-201ENST00000362554 111 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 Y_RNA.197-201ENST00000364004 102 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 RNU11-4P-201ENST00000391149 133 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 CISD1P1-201ENST00000393907 327 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 HDGFP1-201ENST00000405943 252 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 AL136133.1-201ENST00000413694 376 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 PDSS1P1-201ENST00000422953 1114 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 NANOGP6-201ENST00000429190 847 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 RPL21P110-201ENST00000433345 446 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 RPS3AP52-201ENST00000435639 297 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 RPS29P7-201ENST00000439662 171 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 RPL7P59-201ENST00000447700 943 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 RPL23AP81-201ENST00000455252 467 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 HMGN2P26-201ENST00000463169 339 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 MTATP8P1-201ENST00000467115 207 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 TRBV8-2-201ENST00000475637 270 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 AC026801.2-201ENST00000515352 425 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 RNU6-150P-201ENST00000516237 95 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 SNORD60.2-201ENST00000516883 86 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 RNU6-1271P-201ENST00000517049 105 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 SUB1P1-201ENST00000524415 382 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 CYCSP28-201ENST00000534284 321 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 NDUFB1-204ENST00000555441 458 ntAPPRIS P1 TSL 3 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 AC053481.4-201ENST00000583164 216 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 AL359999.1-201ENST00000604513 294 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 AC093913.1-201ENST00000614178 329 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 uc_338.32-201ENST00000615087 172 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 PACRG-211ENST00000621363 360 ntTSL 5 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 RIOK3P1-201ENST00000418778 1528 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC4.35□□□□□ -1.71
CHFRQ96EP1 NUP58P1-201ENST00000502546 1738 ntBASIC4.35□□□□□ -1.71
CHFRQ96EP1 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
CHFRQ96EP1 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms