Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RPS26P40-201ENST00000435209 294 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC004837.2-201ENST00000435766 731 ntTSL 3 BASIC4.42□□□□□ -1.7
USP39Q53GS9 AC073415.1-201ENST00000449240 153 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RPL23AP15-201ENST00000450202 459 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RN7SL132P-201ENST00000478131 296 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AL163973.1-201ENST00000484753 577 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RN7SL812P-201ENST00000493791 279 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC090453.1-201ENST00000495560 436 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC008958.1-201ENST00000511047 682 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.42□□□□□ -1.7
USP39Q53GS9 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC4.42□□□□□ -1.7
USP39Q53GS9 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.42□□□□□ -1.7
USP39Q53GS9 NPM1P41-201ENST00000512920 831 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 RNU6-559P-201ENST00000516151 98 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 SCARNA24.1-201ENST00000516465 137 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 SNORA25.17-201ENST00000517184 124 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 NARSP2-201ENST00000518524 679 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 ALKBH3-AS1-202ENST00000527960 547 ntTSL 4 BASIC4.42□□□□□ -1.7
USP39Q53GS9 OR4R1P-201ENST00000529879 463 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC018630.1-201ENST00000541376 925 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.42□□□□□ -1.7
USP39Q53GS9 BNIP3P6-201ENST00000549284 499 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AL163153.1-201ENST00000554223 283 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 OR4T1P-201ENST00000554933 911 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.42□□□□□ -1.7
USP39Q53GS9 MIR4503-201ENST00000582187 83 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC067852.4-201ENST00000590314 478 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 LINC01905-206ENST00000593180 524 ntTSL 2 BASIC4.42□□□□□ -1.7
USP39Q53GS9 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC4.42□□□□□ -1.7
USP39Q53GS9 IGKV1OR2-118-201ENST00000603238 347 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.42□□□□□ -1.7
USP39Q53GS9 AC019193.3-201ENST00000609144 554 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC084781.2-201ENST00000615568 161 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC009318.4-201ENST00000620496 486 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AL590227.1-201ENST00000622616 315 ntTSL 5 BASIC4.42□□□□□ -1.7
USP39Q53GS9 AC079597.1-201ENST00000624306 508 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.42□□□□□ -1.7
USP39Q53GS9 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP39Q53GS9 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC4.42□□□□□ -1.7
USP39Q53GS9 ASNSP3-201ENST00000451989 1306 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 AC092125.1-201ENST00000562568 1995 ntBASIC4.42□□□□□ -1.7
USP39Q53GS9 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 CCNYL2-202ENST00000637719 3311 ntTSL 2 BASIC4.41□□□□□ -1.7
USP39Q53GS9 NABP1-205ENST00000425611 1878 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP39Q53GS9 AC022031.1-201ENST00000585985 2593 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 RNA5SP513-201ENST00000364648 118 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 RNA5SP283-201ENST00000365604 119 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.41□□□□□ -1.7
USP39Q53GS9 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP39Q53GS9 RNU6-1297P-201ENST00000384415 104 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 CD3D-202ENST00000392884 476 ntTSL 2 BASIC4.41□□□□□ -1.7
USP39Q53GS9 AL583835.1-201ENST00000399570 407 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 MEIG1-202ENST00000407572 625 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
USP39Q53GS9 FRMPD3-AS1-201ENST00000415252 457 ntTSL 3 BASIC4.41□□□□□ -1.7
USP39Q53GS9 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 AC008280.1-201ENST00000418851 412 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 NUP35P1-201ENST00000422734 947 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 PMCHL1-202ENST00000423102 261 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AL117339.2-201ENST00000430475 180 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 RPL23AP52-201ENST00000439311 478 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC4.41□□□□□ -1.7
USP39Q53GS9 RPS20P32-201ENST00000456044 356 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AC007547.1-201ENST00000462177 490 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 CREM-226ENST00000469949 721 ntTSL 3 BASIC4.41□□□□□ -1.7
USP39Q53GS9 RAD51AP1P1-201ENST00000484195 1001 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AP001025.2-201ENST00000490908 477 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AC108022.1-201ENST00000493466 478 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AC034222.1-201ENST00000494052 532 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 HMGB1P21-201ENST00000502313 581 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AC017037.1-201ENST00000508460 471 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.41□□□□□ -1.7
USP39Q53GS9 RNU6-488P-201ENST00000515918 99 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 RN7SKP82-201ENST00000516786 223 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 RNU6-794P-201ENST00000517261 64 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.41□□□□□ -1.7
USP39Q53GS9 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.41□□□□□ -1.7
USP39Q53GS9 SUMO2P20-201ENST00000520803 283 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 COPS8P3-201ENST00000526024 482 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 TRAV8-5-201ENST00000537369 341 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC4.41□□□□□ -1.7
USP39Q53GS9 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 AL356432.3-201ENST00000568952 465 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AC091178.1-203ENST00000584586 279 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC4.41□□□□□ -1.7
USP39Q53GS9 BBIP1P1-201ENST00000602999 279 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 XIAPP1-201ENST00000603162 600 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.41□□□□□ -1.7
USP39Q53GS9 AC090425.1-201ENST00000610007 140 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 BPY2B-204ENST00000615850 321 ntAPPRIS P5 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP39Q53GS9 BPY2C-204ENST00000618574 321 ntAPPRIS P5 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP39Q53GS9 AL359757.2-201ENST00000624309 274 ntBASIC4.41□□□□□ -1.7
USP39Q53GS9 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
USP39Q53GS9 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 86.2 ms