Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC019129.1-201ENST00000403786 261 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 RPL7P37-201ENST00000425095 738 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC092473.1-201ENST00000441098 221 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 SSXP4-201ENST00000451349 245 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 CDC42P1-201ENST00000456658 548 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 SYPL1P1-201ENST00000473622 768 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 RPL23AP55-201ENST00000498163 452 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 RNA5SP480-201ENST00000516840 109 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 AP002812.3-201ENST00000527012 551 ntTSL 5 BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 OR4P1P-201ENST00000530808 1136 ntBASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 SOBP-204ENST00000618129 1550 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
CCDC88AQ3V6T2 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 FKTN-204ENST00000448551 1700 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 SNORA51.2-201ENST00000364595 132 ntBASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 RNU4-65P-201ENST00000410473 140 ntBASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 HSPE1P1-201ENST00000421494 318 ntBASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 YWHAZP8-201ENST00000436935 731 ntBASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 snoU13.3-201ENST00000459441 104 ntBASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 AC245128.3-201ENST00000594721 748 ntBASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 LINC01930-201ENST00000602672 870 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 MIR6504-201ENST00000613520 61 ntBASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 ZNF461-214ENST00000618437 774 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 AP003122.6-201ENST00000623831 495 ntBASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC2.25□□□□□ -2.05
CCDC88AQ3V6T2 MTND4P23-201ENST00000447723 1363 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 CUBN-201ENST00000377823 705 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 Z86062.1-201ENST00000406773 777 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 MIR1294-201ENST00000408503 142 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC241520.1-201ENST00000422654 1099 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 XKRY2-201ENST00000442362 1093 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 RPS29P12-201ENST00000460178 152 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 RPL21P39-201ENST00000463605 483 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC104564.1-201ENST00000493028 407 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 RNF138P1-201ENST00000502765 546 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC092436.3-201ENST00000511788 257 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC006249.1-201ENST00000621223 471 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC092745.2-202ENST00000411880 369 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 RPS7P9-201ENST00000414704 586 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC099677.1-201ENST00000420575 175 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AL157884.2-201ENST00000424177 551 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AL162742.2-201ENST00000472915 244 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC010301.1-201ENST00000473936 355 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC104115.2-201ENST00000523026 687 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 RPS3AP23-202ENST00000574601 686 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 MIR4446-201ENST00000578505 67 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AP001029.3-201ENST00000588063 596 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC242628.1-201ENST00000606810 391 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 RMST_2.1-201ENST00000617263 136 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 AC024595.1-201ENST00000623088 387 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 FO624990.1-201ENST00000636373 85 ntBASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.24□□□□□ -2.05
CCDC88AQ3V6T2 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 RNU4-23P-201ENST00000362839 140 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 RNU6-1293P-201ENST00000384077 107 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AL138880.1-201ENST00000405824 642 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 RNU4-74P-201ENST00000411280 161 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 CKS1BP5-201ENST00000434172 273 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AC009238.1-201ENST00000442165 424 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AC009237.8-201ENST00000445492 379 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AC009237.6-201ENST00000446969 424 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 MTCO3P35-201ENST00000485582 781 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AC107398.1-201ENST00000486904 505 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 TET2-AS1-201ENST00000515414 537 ntTSL 5 BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 RNU6-711P-201ENST00000517255 106 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 SNORA4-201ENST00000584302 138 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 RNU6-156P-201ENST00000621869 107 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 AC106730.3-201ENST00000624568 641 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 KPNA2P1-201ENST00000458289 1591 ntBASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
CCDC88AQ3V6T2 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms