Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.4□□□□□ -2.19
CHD9Q3L8U1 METTL21EP-201ENST00000298105 713 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 RNA5SP363-201ENST00000365072 115 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 SLC9B1P2-201ENST00000398120 1184 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 RNA5SP489-201ENST00000410986 109 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 RAD23BP2-201ENST00000416003 1207 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 FKBP7-205ENST00000434643 666 ntAPPRIS ALT2 TSL 1 (best) BASIC1.4□□□□□ -2.19
CHD9Q3L8U1 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.4□□□□□ -2.19
CHD9Q3L8U1 RPL23AP62-201ENST00000463396 453 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 AC104115.2-201ENST00000523026 687 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 AC068135.2-201ENST00000569293 1028 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 AC011712.1-201ENST00000588959 234 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC1.4□□□□□ -2.19
CHD9Q3L8U1 RLIMP2-201ENST00000427891 1563 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 SLC10A5P1-201ENST00000379063 1306 ntBASIC1.4□□□□□ -2.19
CHD9Q3L8U1 MTND5P10-201ENST00000603719 1809 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 LRRC39-201ENST00000342895 1881 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 Y_RNA.393-201ENST00000383936 102 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 AC104986.1-201ENST00000517978 436 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 CBX3P2-202ENST00000583365 535 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 MIR6715B-201ENST00000637172 77 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 UBE2V1P6-201ENST00000430840 422 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 SNORA31.15-201ENST00000516771 132 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 RNU1-92P-201ENST00000517017 135 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC1.39□□□□□ -2.19
CHD9Q3L8U1 AC034268.2-201ENST00000571784 482 ntBASIC1.39□□□□□ -2.19
CHD9Q3L8U1 XIAPP3-201ENST00000312918 795 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 SSR1P1-201ENST00000407630 814 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AC062039.1-201ENST00000414394 565 ntTSL 2 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 TRIAP1P1-201ENST00000427062 225 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AC096571.1-202ENST00000506634 735 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AP000753.2-201ENST00000540307 423 ntTSL 3 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AC023825.1-201ENST00000566704 1030 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 CCDC158-202ENST00000434846 1728 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 MTND1P23-201ENST00000416931 372 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AC022022.1-201ENST00000430304 178 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AC005297.2-201ENST00000450430 606 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 OR8X1P-201ENST00000534542 869 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC1.38□□□□□ -2.19
CHD9Q3L8U1 ZNF33CP-201ENST00000432492 2030 ntBASIC1.38□□□□□ -2.19
CHD9Q3L8U1 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC010265.1-201ENST00000513509 211 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 RN7SKP5-201ENST00000517045 272 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AP005435.4-201ENST00000529514 284 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 SEPT7P9-203ENST00000604116 343 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 MKKS-204ENST00000639674 192 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 CYCSP33-201ENST00000414485 327 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC013268.2-201ENST00000420753 337 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 RN7SKP265-201ENST00000516448 223 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 RNU6-113P-201ENST00000516653 101 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC008687.2-201ENST00000597865 520 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC091488.1-201ENST00000604239 660 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC097504.2-201ENST00000608088 454 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 MTND5P7-201ENST00000413558 1798 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC114546.3-201ENST00000623582 1734 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 Y_RNA.68-201ENST00000362881 102 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC099060.1-201ENST00000427806 448 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 HAR1A.1-201ENST00000459583 118 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC114801.2-201ENST00000503825 781 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC139103.1-201ENST00000534696 1030 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 PPFIA2-AS1-202ENST00000549161 1080 ntTSL 3 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AL135786.2-201ENST00000608422 615 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AP001486.2-201ENST00000561652 5113 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC009541.1-201ENST00000438279 2662 ntBASIC1.37□□□□□ -2.19
CHD9Q3L8U1 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC1.37□□□□□ -2.19
CHD9Q3L8U1 RNU2-25P-201ENST00000411041 191 ntBASIC1.36□□□□□ -2.19
CHD9Q3L8U1 AP000926.1-201ENST00000479573 241 ntBASIC1.36□□□□□ -2.19
CHD9Q3L8U1 RNA5SP384-201ENST00000516615 116 ntBASIC1.36□□□□□ -2.19
CHD9Q3L8U1 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 AL121821.2-201ENST00000556081 394 ntBASIC1.36□□□□□ -2.19
CHD9Q3L8U1 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 MIR758-201ENST00000390227 88 ntBASIC1.36□□□□□ -2.19
CHD9Q3L8U1 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 LINC01797-202ENST00000433432 765 ntTSL 3 BASIC1.36□□□□□ -2.19
CHD9Q3L8U1 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 99.5 ms