Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 OR4R1P-201ENST00000529879 463 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC1.78□□□□□ -2.13
CHD3Q12873 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC1.78□□□□□ -2.13
CHD3Q12873 POLR2KP1-201ENST00000553226 168 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 RPS3AP23-202ENST00000574601 686 ntBASIC1.78□□□□□ -2.13
CHD3Q12873 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC1.78□□□□□ -2.13
CHD3Q12873 AL589740.1-205ENST00000635561 565 ntTSL 5 BASIC1.78□□□□□ -2.13
CHD3Q12873 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC1.77□□□□□ -2.13
CHD3Q12873 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.77□□□□□ -2.13
CHD3Q12873 AL390198.1-201ENST00000376445 320 ntTSL 2 BASIC1.77□□□□□ -2.13
CHD3Q12873 U3.40-201ENST00000408706 208 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 PTP4A1P7-201ENST00000423476 514 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC1.77□□□□□ -2.13
CHD3Q12873 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC1.77□□□□□ -2.13
CHD3Q12873 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC1.77□□□□□ -2.13
CHD3Q12873 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC1.77□□□□□ -2.13
CHD3Q12873 AC107398.1-201ENST00000486904 505 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC1.77□□□□□ -2.13
CHD3Q12873 KATNBL1P4-201ENST00000503545 918 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 RNU1-104P-201ENST00000517280 175 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 TRIQK-207ENST00000519069 598 ntTSL 4 BASIC1.77□□□□□ -2.13
CHD3Q12873 AP004371.1-201ENST00000525240 214 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 OR10V3P-201ENST00000525712 725 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 MGST1-215ENST00000540056 546 ntTSL 3 BASIC1.77□□□□□ -2.13
CHD3Q12873 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC1.77□□□□□ -2.13
CHD3Q12873 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC1.77□□□□□ -2.13
CHD3Q12873 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC1.77□□□□□ -2.13
CHD3Q12873 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC1.77□□□□□ -2.13
CHD3Q12873 AC135803.1-201ENST00000608748 565 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 AC091834.1-201ENST00000614543 472 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 AC010378.1-201ENST00000619270 362 ntBASIC1.77□□□□□ -2.13
CHD3Q12873 CENPCP1-201ENST00000533085 2578 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 STAU2-225ENST00000523558 1603 ntTSL 2 BASIC1.76□□□□□ -2.13
CHD3Q12873 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CHD3Q12873 MTATP6P31-201ENST00000406985 692 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 IPO7P1-201ENST00000442031 636 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC1.76□□□□□ -2.13
CHD3Q12873 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC1.76□□□□□ -2.13
CHD3Q12873 SNORD13-201ENST00000459299 104 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
CHD3Q12873 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC1.76□□□□□ -2.13
CHD3Q12873 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC1.76□□□□□ -2.13
CHD3Q12873 HAUS1P3-201ENST00000523909 662 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC023158.1-201ENST00000561632 1025 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.76□□□□□ -2.13
CHD3Q12873 AP005433.1-201ENST00000582939 620 ntTSL 2 BASIC1.76□□□□□ -2.13
CHD3Q12873 KATNBL1P1-201ENST00000605192 748 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC112503.2-201ENST00000609005 552 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC093838.1-201ENST00000613014 469 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AL110115.1-201ENST00000614396 364 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 GMFB-210ENST00000628554 639 ntTSL 4 BASIC1.76□□□□□ -2.13
CHD3Q12873 AC093591.3-201ENST00000634516 308 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC119674.1-220ENST00000641502 1048 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
CHD3Q12873 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC1.76□□□□□ -2.13
CHD3Q12873 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
CHD3Q12873 RNA5SP391-201ENST00000363456 119 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 RNA5SP37-201ENST00000365420 130 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
CHD3Q12873 AGR3-202ENST00000402239 563 ntTSL 2 BASIC1.76□□□□□ -2.13
CHD3Q12873 AL355497.1-201ENST00000406262 551 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC1.76□□□□□ -2.13
CHD3Q12873 AL353729.1-201ENST00000425044 720 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC092427.1-202ENST00000430569 476 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 RPL7P54-201ENST00000438336 674 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 TRAV11-201ENST00000539512 339 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AL049870.4-201ENST00000555741 486 ntBASIC1.76□□□□□ -2.13
CHD3Q12873 AC110609.1-201ENST00000608228 303 ntTSL 3 BASIC1.76□□□□□ -2.13
CHD3Q12873 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
CHD3Q12873 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
CHD3Q12873 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHD3Q12873 CNBD1-202ENST00000518476 1594 ntAPPRIS P2 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHD3Q12873 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
CHD3Q12873 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHD3Q12873 RN7SKP226-201ENST00000364912 300 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC1.75□□□□□ -2.13
CHD3Q12873 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC1.75□□□□□ -2.13
CHD3Q12873 MTCO1P42-201ENST00000457379 726 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 snoU13.3-201ENST00000459441 104 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 NCOR1P1-202ENST00000486162 291 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 RPS29P20-201ENST00000489592 171 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.75□□□□□ -2.13
CHD3Q12873 AP003110.1-201ENST00000526976 717 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
CHD3Q12873 FAM92A1P1-201ENST00000528023 890 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 AC027104.1-201ENST00000563702 681 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 MIR5194-201ENST00000582634 120 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 AC092954.1-201ENST00000609121 445 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 AC079597.1-201ENST00000624306 508 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 WWP1P1-201ENST00000466609 2769 ntBASIC1.75□□□□□ -2.13
CHD3Q12873 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHD3Q12873 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHD3Q12873 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
CHD3Q12873 AK9-203ENST00000368948 2478 ntTSL 5 BASIC1.75□□□□□ -2.13
CHD3Q12873 AL139276.1-201ENST00000311910 1001 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
CHD3Q12873 SNORD23.1-201ENST00000408212 104 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 RNU6-1140P-201ENST00000410517 106 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 LUZP4P1-201ENST00000415420 344 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AL512504.1-201ENST00000415494 778 ntBASIC1.74□□□□□ -2.13
CHD3Q12873 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms