Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA4Q00056 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HOXA4Q00056 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.69□□□□□ -1.82
HOXA4Q00056 OR4S2-202ENST00000641692 2211 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
HOXA4Q00056 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA4Q00056 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA4Q00056 API5P2-201ENST00000397055 1498 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA4Q00056 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA4Q00056 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA4Q00056 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA4Q00056 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 RNU6-1155P-201ENST00000363554 107 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 RNU6-1284P-201ENST00000363701 100 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 Y_RNA.378-201ENST00000365652 113 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 PARD3-204ENST00000374768 799 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AL583834.1-201ENST00000406943 343 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 MIR1911-201ENST00000410783 80 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 RAB28P1-201ENST00000411517 641 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 EIF4A1P3-201ENST00000411521 244 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 FAR2P2-201ENST00000413041 594 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 OR6C66P-201ENST00000414917 930 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 RPS7P15-201ENST00000415804 584 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AC099677.1-201ENST00000420575 175 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AL451054.2-201ENST00000420896 202 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXA4Q00056 FAR2P4-202ENST00000425399 584 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 RPL18P10-201ENST00000425606 538 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AL080284.1-201ENST00000434493 442 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA4Q00056 RPL36AP6-201ENST00000435770 321 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 HMGB3P11-201ENST00000440127 604 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA4Q00056 PHBP16-201ENST00000446318 950 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AL121877.1-201ENST00000453704 622 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 CYP4F62P-203ENST00000455215 552 ntTSL 4 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AC008481.1-201ENST00000463278 396 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA4Q00056 C10orf128-207ENST00000474718 614 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA4Q00056 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC3.68□□□□□ -1.82
HOXA4Q00056 CCDC34P1-201ENST00000507441 517 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 RBBP4P6-201ENST00000508098 202 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 HHIP-AS1-203ENST00000512359 646 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA4Q00056 RNA5SP497-201ENST00000516081 97 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA4Q00056 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.68□□□□□ -1.82
HOXA4Q00056 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AF038458.1-201ENST00000588406 262 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 ZEB2-AS1-204ENST00000595109 855 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA4Q00056 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AL390240.1-201ENST00000612950 384 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AL450472.3-201ENST00000615578 367 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AC099669.2-201ENST00000616549 437 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 U73479.1-201ENST00000618062 168 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AC068831.8-201ENST00000620171 435 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
HOXA4Q00056 AL160413.1-201ENST00000622780 310 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 MIR7641-1-201ENST00000627518 61 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 CNOT1-223ENST00000628857 291 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA4Q00056 EXOC5P1-201ENST00000510543 1969 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA4Q00056 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA4Q00056 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA4Q00056 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC3.68□□□□□ -1.82
HOXA4Q00056 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC3.68□□□□□ -1.82
HOXA4Q00056 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA4Q00056 DDX10P1-201ENST00000448545 1933 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 EOGT-210ENST00000615922 1931 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
HOXA4Q00056 HSP90AA5P-201ENST00000438353 2192 ntBASIC3.68□□□□□ -1.82
HOXA4Q00056 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA4Q00056 MAPK10-286ENST00000641208 8747 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA4Q00056 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
HOXA4Q00056 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.67□□□□□ -1.82
HOXA4Q00056 MTND4P14-201ENST00000435799 1354 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.67□□□□□ -1.82
HOXA4Q00056 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC3.67□□□□□ -1.82
HOXA4Q00056 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 Y_RNA.100-201ENST00000363141 102 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RNU1-20P-201ENST00000363314 162 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RN7SKP224-201ENST00000364140 325 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 SMIM11P1-201ENST00000369586 178 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RNU1-44P-201ENST00000384453 163 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
HOXA4Q00056 AL354751.2-201ENST00000415471 210 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RPS23P10-201ENST00000416185 486 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 HSPE1P1-201ENST00000421494 318 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 RPL7P46-201ENST00000425129 740 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 AC018644.1-201ENST00000429934 551 ntBASIC3.67□□□□□ -1.82
HOXA4Q00056 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms