Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 HMGB3P26-201ENST00000560051 582 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
COL6A3P12111 RNU6-198P-201ENST00000384258 104 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 AL033519.2-201ENST00000403958 392 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 HMGN2P35-201ENST00000412164 270 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 LIX1L-AS1-204ENST00000437207 222 ntTSL 5 BASIC1.57□□□□□ -2.16
COL6A3P12111 NEFMP1-201ENST00000443423 1006 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 RPL23AP7-203ENST00000449021 469 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.57□□□□□ -2.16
COL6A3P12111 DUXAP5-201ENST00000529668 529 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 AC010487.4-201ENST00000637027 61 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.57□□□□□ -2.16
COL6A3P12111 SGO1P2-201ENST00000429458 1589 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 MT-CO3-201ENST00000362079 784 ntAPPRIS P1 BASIC1.57□□□□□ -2.16
COL6A3P12111 U8.9-201ENST00000365667 134 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 RN7SKP200-201ENST00000410564 320 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 RSL24D1P2-201ENST00000445584 366 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 SPANXN4-202ENST00000446864 431 ntAPPRIS P2 TSL 1 (best) BASIC1.57□□□□□ -2.16
COL6A3P12111 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC1.57□□□□□ -2.16
COL6A3P12111 AC107032.1-201ENST00000485945 480 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC1.57□□□□□ -2.16
COL6A3P12111 AC090525.3-201ENST00000605601 189 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 MIR6715B-201ENST00000637172 77 ntBASIC1.57□□□□□ -2.16
COL6A3P12111 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC1.56□□□□□ -2.16
COL6A3P12111 SNORA67.6-201ENST00000391093 99 ntBASIC1.56□□□□□ -2.16
COL6A3P12111 CD3D-202ENST00000392884 476 ntTSL 2 BASIC1.56□□□□□ -2.16
COL6A3P12111 RAB3GAP1-202ENST00000425393 1139 ntTSL 2 BASIC1.56□□□□□ -2.16
COL6A3P12111 OR7L1P-201ENST00000456181 380 ntBASIC1.56□□□□□ -2.16
COL6A3P12111 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC1.56□□□□□ -2.16
COL6A3P12111 SPINK7-205ENST00000523535 299 ntTSL 2 BASIC1.56□□□□□ -2.16
COL6A3P12111 AC012150.2-201ENST00000621300 544 ntBASIC1.56□□□□□ -2.16
COL6A3P12111 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.56□□□□□ -2.16
COL6A3P12111 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
COL6A3P12111 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.56□□□□□ -2.16
COL6A3P12111 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC1.56□□□□□ -2.16
COL6A3P12111 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC1.56□□□□□ -2.16
COL6A3P12111 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.56□□□□□ -2.16
COL6A3P12111 RPL23AP78-201ENST00000599928 470 ntBASIC1.56□□□□□ -2.16
COL6A3P12111 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.56□□□□□ -2.16
COL6A3P12111 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
COL6A3P12111 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
COL6A3P12111 BMI1P1-201ENST00000445879 941 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 RN7SKP265-201ENST00000516448 223 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 SNORA31.11-201ENST00000516528 139 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL6A3P12111 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
COL6A3P12111 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC1.55□□□□□ -2.16
COL6A3P12111 AC116447.1-201ENST00000613153 453 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 AC012321.1-201ENST00000561622 1588 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
COL6A3P12111 HMGB3P2-201ENST00000411913 584 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 RWDD4P2-201ENST00000426392 563 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 VN1R96P-201ENST00000446052 858 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 SNRPFP3-201ENST00000457792 225 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 RPS23P4-201ENST00000487908 423 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 RWDD4P1-201ENST00000488019 565 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 MTND5P4-201ENST00000514978 288 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 CA1-215ENST00000522389 551 ntTSL 3 BASIC1.55□□□□□ -2.16
COL6A3P12111 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC1.55□□□□□ -2.16
COL6A3P12111 MIR6078-201ENST00000611069 100 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 RFC1-217ENST00000639695 867 ntTSL 5 BASIC1.55□□□□□ -2.16
COL6A3P12111 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
COL6A3P12111 SETP10-201ENST00000424368 814 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 AC087190.1-201ENST00000484462 480 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 SNORA31.24-201ENST00000517232 57 ntBASIC1.55□□□□□ -2.16
COL6A3P12111 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
COL6A3P12111 Y_RNA.488-201ENST00000384403 102 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 AC009965.2-201ENST00000425328 970 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 BACH1-IT3-201ENST00000429843 406 ntTSL 2 BASIC1.54□□□□□ -2.16
COL6A3P12111 RPS26P24-201ENST00000497656 331 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC1.54□□□□□ -2.16
COL6A3P12111 MTCO3P44-201ENST00000510977 541 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 ZNF271P-202ENST00000465539 1970 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 RNA5SP138-201ENST00000365098 114 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC1.54□□□□□ -2.16
COL6A3P12111 AL021397.1-201ENST00000451806 248 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 RPS29P29-201ENST00000456396 171 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 RPL23AP62-201ENST00000463396 453 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC1.54□□□□□ -2.16
COL6A3P12111 MIR3670-2-201ENST00000582974 65 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 MIR3670-1-201ENST00000584160 65 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 MIR3670-3-201ENST00000584855 65 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 AC007229.1-201ENST00000590455 412 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 MIR3670-4-201ENST00000612260 65 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 AL109933.3-201ENST00000619095 188 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.54□□□□□ -2.16
COL6A3P12111 MIR338-201ENST00000636369 67 ntBASIC1.54□□□□□ -2.16
COL6A3P12111 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC1.54□□□□□ -2.16
COL6A3P12111 MCTS2P-201ENST00000394552 546 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 AC017048.2-201ENST00000431455 822 ntTSL 3 BASIC1.53□□□□□ -2.16
COL6A3P12111 AC104472.2-201ENST00000469035 601 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 MAGOH2P-202ENST00000584384 429 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 AL049779.4-201ENST00000604500 156 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC1.53□□□□□ -2.16
COL6A3P12111 AC097504.2-201ENST00000608088 454 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.53□□□□□ -2.16
COL6A3P12111 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.53□□□□□ -2.16
COL6A3P12111 Y_RNA.549-201ENST00000384657 102 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 AL445213.1-201ENST00000412589 747 ntBASIC1.53□□□□□ -2.16
COL6A3P12111 AL358176.2-201ENST00000425769 204 ntBASIC1.53□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 101.7 ms