Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 MIR6780A-201ENST00000615089 68 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 FAM157A-202ENST00000615155 405 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AC008121.3-201ENST00000618726 433 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 uc_338.22-201ENST00000622722 187 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 AL592437.2-201ENST00000421655 2434 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
HOXA3O43365 AC139769.1-204ENST00000472297 1931 ntBASIC3.97□□□□□ -1.77
HOXA3O43365 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.97□□□□□ -1.77
HOXA3O43365 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
HOXA3O43365 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
HOXA3O43365 ERVFRD-3-201ENST00000578561 1617 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA3O43365 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA3O43365 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA3O43365 HSPA8P4-201ENST00000511877 1920 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 Y_RNA.135-201ENST00000363439 95 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 Y_RNA.145-201ENST00000363527 102 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RNU6-288P-201ENST00000363690 104 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RNU1-32P-201ENST00000363937 159 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 SNORA22B-201ENST00000383876 138 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RNU6-190P-201ENST00000384154 102 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 SNORD3H-201ENST00000384486 214 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RNU6-882P-201ENST00000391025 103 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 SNORA48.4-201ENST00000391089 134 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 AL445189.1-201ENST00000405722 338 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RNU6ATAC16P-201ENST00000408591 138 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RN7SKP100-201ENST00000411258 284 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 EIF4A1P3-201ENST00000411521 244 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RPLP0P7-201ENST00000416050 667 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 AL669831.1-202ENST00000428504 417 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 AL591704.1-201ENST00000432574 275 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA3O43365 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA3O43365 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC3.96□□□□□ -1.78
HOXA3O43365 AURKAPS2-201ENST00000454983 333 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 MTCO3P10-201ENST00000455912 772 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA3O43365 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 ZIC4-AS1-201ENST00000462168 268 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA3O43365 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 AC108145.1-201ENST00000503770 153 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 MTCYBP40-201ENST00000509390 1135 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 AC010280.1-201ENST00000515199 340 ntTSL 2 BASIC3.96□□□□□ -1.78
HOXA3O43365 RN7SKP276-201ENST00000516242 268 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RNU6-1069P-201ENST00000516612 133 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 RNU6-677P-201ENST00000516914 101 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 SNORA31.22-201ENST00000517204 135 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA3O43365 IGKV1-32-201ENST00000519290 311 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 AC104237.1-201ENST00000527443 539 ntTSL 4 BASIC3.96□□□□□ -1.78
HOXA3O43365 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 DYNLL1P4-201ENST00000549314 266 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 SNRPGP18-201ENST00000553000 214 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 NDUFB4P11-201ENST00000560510 395 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 MTCO3P23-201ENST00000561363 289 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 AC008737.2-201ENST00000599446 118 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 XIAPP1-201ENST00000603162 600 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA3O43365 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA3O43365 AL355365.1-201ENST00000616480 294 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 AL731566.2-201ENST00000618971 317 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 MIR7703-201ENST00000620784 77 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 MTND5P42-201ENST00000637720 498 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA3O43365 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA3O43365 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC3.96□□□□□ -1.78
HOXA3O43365 AC073869.10-201ENST00000642016 354 ntBASIC3.96□□□□□ -1.78
HOXA3O43365 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA3O43365 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA3O43365 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA3O43365 RNMT-206ENST00000589866 1879 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA3O43365 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
HOXA3O43365 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC3.96□□□□□ -1.78
HOXA3O43365 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
HOXA3O43365 MTND5P10-201ENST00000603719 1809 ntBASIC3.95□□□□□ -1.78
HOXA3O43365 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC3.95□□□□□ -1.78
HOXA3O43365 CBLL1-201ENST00000222597 2003 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA3O43365 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC3.95□□□□□ -1.78
HOXA3O43365 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC3.95□□□□□ -1.78
HOXA3O43365 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
HOXA3O43365 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
HOXA3O43365 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
HOXA3O43365 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC3.95□□□□□ -1.78
HOXA3O43365 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA3O43365 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA3O43365 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA3O43365 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC3.95□□□□□ -1.78
HOXA3O43365 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA3O43365 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA3O43365 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
HOXA3O43365 RNU6-562P-201ENST00000362731 107 ntBASIC3.95□□□□□ -1.78
HOXA3O43365 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.95□□□□□ -1.78
HOXA3O43365 RN7SKP224-201ENST00000364140 325 ntBASIC3.95□□□□□ -1.78
HOXA3O43365 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
HOXA3O43365 RNU6-76P-201ENST00000384060 104 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 159.9 ms