Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
VPS9D1Q9Y2B5 LINGO2-204ENST00000613945 2981 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
VPS9D1Q9Y2B5 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC6.06□□□□□ -1.44
VPS9D1Q9Y2B5 THAP12P9-201ENST00000503971 2360 ntBASIC6.06□□□□□ -1.44
VPS9D1Q9Y2B5 RBMY1HP-201ENST00000382759 1389 ntBASIC6.06□□□□□ -1.44
VPS9D1Q9Y2B5 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 STK31-205ENST00000433467 3085 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 LINC00550-201ENST00000629293 3434 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 NCAPGP1-201ENST00000505112 1814 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 MIR92A2-201ENST00000385299 75 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 RNU1-139P-201ENST00000391307 165 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 MAP1LC3BP1-201ENST00000417653 379 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 RPL35AP31-201ENST00000418340 337 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AC063976.4-201ENST00000421971 163 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 RPL7AP25-201ENST00000423357 805 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 RPL7L1P1-201ENST00000448259 785 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 RPL12P30-201ENST00000488389 499 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 CREM-238ENST00000488741 651 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 DUTP1-201ENST00000493631 470 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 RN7SL362P-201ENST00000494228 267 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 SNRPCP2-201ENST00000504370 475 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 RNU6-191P-201ENST00000516295 94 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AC091078.2-201ENST00000557145 559 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AC022968.1-201ENST00000567372 442 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 MIR1273C-201ENST00000578669 77 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 RNU4ATAC-201ENST00000580972 127 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 OR2A12-202ENST00000641592 4163 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 AC123769.1-201ENST00000530992 3192 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 PRR14L-201ENST00000327423 10826 ntAPPRIS P2 TSL 5 BASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 BRAFP1-201ENST00000445336 2703 ntBASIC6.05□□□□□ -1.44
VPS9D1Q9Y2B5 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 RNA5SP375-201ENST00000362975 119 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 RNA5SP197-201ENST00000363357 119 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 Y_RNA.337-201ENST00000365312 102 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 GNG5P2-201ENST00000372054 207 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 RNA5SP213-201ENST00000391031 106 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 RPL31P2-201ENST00000413849 377 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 BTF3P11-201ENST00000426582 477 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 AL451062.2-201ENST00000427515 271 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 AC005154.2-201ENST00000438110 379 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 AC097359.1-201ENST00000447946 463 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 AC002553.3-201ENST00000453002 341 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 RN7SL649P-201ENST00000496974 275 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 ZNF519P4-201ENST00000514008 125 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 RNU6-1114P-201ENST00000516022 107 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 LINC01630-204ENST00000582689 539 ntTSL 4 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 AL139395.1-201ENST00000603662 160 ntBASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC6.04□□□□□ -1.44
VPS9D1Q9Y2B5 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 RAPGEF2-201ENST00000264431 6949 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 LINC01748-203ENST00000634836 3229 ntTSL 5 BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 AC005725.1-201ENST00000577346 2607 ntBASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 SNORA21-201ENST00000362423 132 ntBASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 RNU6-1272P-201ENST00000362776 107 ntBASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 RNU6-961P-201ENST00000363893 105 ntBASIC6.03□□□□□ -1.44
VPS9D1Q9Y2B5 OR1L6-202ENST00000373684 1044 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 124.5 ms