Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 PAXBP1P1-201ENST00000449315 447 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC098826.2-201ENST00000452011 651 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 ART2BP-201ENST00000453501 499 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 snoU13.8-201ENST00000458890 104 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC104563.1-201ENST00000476147 376 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 LINC02484-201ENST00000513843 546 ntTSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC008015.1-201ENST00000555505 465 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AP005205.1-201ENST00000563503 508 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 ANKRD36BP2-206ENST00000575193 1245 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC233702.6-201ENST00000584594 396 ntTSL 3 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AL031176.1-201ENST00000604554 466 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC100793.4-201ENST00000613683 429 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AL590099.1-201ENST00000615276 138 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AP000676.3-201ENST00000623299 569 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC019226.2-201ENST00000625973 424 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 MGAT4C-202ENST00000548651 2159 ntAPPRIS P1 TSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 FRG1BP-201ENST00000278882 761 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 TTTY13-201ENST00000330337 659 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 Y_RNA.18-201ENST00000362461 102 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 SNORA38.1-201ENST00000364172 131 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 SNORA9-201ENST00000384215 133 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 RNU6-1207P-201ENST00000384343 107 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 MIR320C1-201ENST00000408566 88 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 RN7SKP266-201ENST00000410232 287 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 TEX41-202ENST00000414256 604 ntTSL 5 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 RPL31P12-201ENST00000422587 358 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AL445669.1-201ENST00000426743 755 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 UBE2FP3-201ENST00000436366 524 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 OR6K5P-201ENST00000447050 945 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AP000542.1-201ENST00000448473 371 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 HMGN2P13-201ENST00000476476 274 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 SCOC-205ENST00000502535 679 ntAPPRIS ALT1 TSL 3 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 LINC01846-201ENST00000505908 651 ntTSL 5 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC034159.1-201ENST00000513885 583 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AL161756.2-201ENST00000604597 246 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC072039.2-201ENST00000608883 439 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC106028.5-201ENST00000610332 395 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 uc_338.25-201ENST00000613756 156 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC138932.5-201ENST00000617759 563 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC026422.1-201ENST00000623961 452 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AC073476.4-201ENST00000628409 72 ntBASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 LIPJ-201ENST00000371939 1484 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
CPSF3Q9UKF6 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AL672167.1-206ENST00000356293 943 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 RNU6-660P-201ENST00000364566 109 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AF228730.1-201ENST00000397972 663 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 MRPL30-202ENST00000409145 562 ntTSL 2 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 BX890604.2-201ENST00000427883 474 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AC104308.1-201ENST00000454621 333 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 LINC01546-201ENST00000457435 674 ntTSL 2 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 HMGN1P18-201ENST00000457642 277 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 RNU7-125P-201ENST00000458760 62 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 RN7SL863P-201ENST00000462370 296 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 SCARNA20.6-201ENST00000517251 106 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AC022690.1-201ENST00000526681 550 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AP003497.1-201ENST00000528472 562 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 COX6CP3-201ENST00000580869 223 ntBASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AC006116.8-203ENST00000587448 465 ntTSL 3 BASIC3.46□□□□□ -1.86
CPSF3Q9UKF6 AC012493.2-201ENST00000595083 291 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 162.7 ms