Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 RN7SKP156-201ENST00000410308 342 ntBASIC9.89□□□□□ -0.83
SENP3Q9H4L4 AC105137.1-201ENST00000484355 562 ntBASIC9.89□□□□□ -0.83
SENP3Q9H4L4 AC092674.1-201ENST00000513871 571 ntTSL 4 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 SCARNA15.2-201ENST00000516409 127 ntBASIC9.89□□□□□ -0.83
SENP3Q9H4L4 AC091304.10-201ENST00000641554 121 ntBASIC9.89□□□□□ -0.83
SENP3Q9H4L4 TYW1B-203ENST00000620995 3113 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 MTFR1L-207ENST00000466284 3262 ntTSL 2 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 SPEF2-211ENST00000509059 4707 ntAPPRIS ALT2 TSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 MAVS-201ENST00000416600 11596 ntTSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 AHI1-204ENST00000367800 5921 ntAPPRIS P2 TSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 GTF2H3-212ENST00000543341 3329 ntAPPRIS P1 TSL 1 (best) BASIC9.89□□□□□ -0.83
SENP3Q9H4L4 NLRP9P1-201ENST00000540920 2655 ntBASIC9.89□□□□□ -0.83
SENP3Q9H4L4 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 BRINP3-201ENST00000367462 3142 ntAPPRIS P1 TSL 1 (best) BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 RNA5SP510-201ENST00000364697 99 ntBASIC9.88□□□□□ -0.83
SENP3Q9H4L4 RPL23AP52-201ENST00000439311 478 ntBASIC9.88□□□□□ -0.83
SENP3Q9H4L4 RPL7AP23-201ENST00000482625 776 ntBASIC9.88□□□□□ -0.83
SENP3Q9H4L4 SRIP1-201ENST00000489235 288 ntBASIC9.88□□□□□ -0.83
SENP3Q9H4L4 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 AC113410.1-201ENST00000505029 247 ntBASIC9.88□□□□□ -0.83
SENP3Q9H4L4 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 CCT7-217ENST00000626868 249 ntTSL 5 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 OFD1P6Y-202ENST00000451061 2724 ntBASIC9.88□□□□□ -0.83
SENP3Q9H4L4 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC9.88□□□□□ -0.83
SENP3Q9H4L4 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 PMFBP1-202ENST00000355636 3501 ntAPPRIS ALT2 TSL 5 BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 ARHGEF7-208ENST00000426073 4921 ntAPPRIS P3 TSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 UTY-202ENST00000331397 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 CD160-205ENST00000616463 3388 ntAPPRIS ALT2 TSL 2 BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 CHEK2P5-201ENST00000423877 246 ntBASIC9.87□□□□□ -0.83
SENP3Q9H4L4 AC018634.1-201ENST00000437554 401 ntBASIC9.87□□□□□ -0.83
SENP3Q9H4L4 RN7SL413P-201ENST00000482700 297 ntBASIC9.87□□□□□ -0.83
SENP3Q9H4L4 AC022523.2-201ENST00000561045 150 ntBASIC9.87□□□□□ -0.83
SENP3Q9H4L4 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 ZNF397-202ENST00000330501 5251 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 RAB6C-AS1-201ENST00000412425 2454 ntTSL 1 (best) BASIC9.87□□□□□ -0.83
SENP3Q9H4L4 NEDD4L-207ENST00000435432 3417 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 C7-201ENST00000313164 4257 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 MAK-202ENST00000354489 3941 ntTSL 5 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 RNU6-529P-201ENST00000363383 104 ntBASIC9.86□□□□□ -0.83
SENP3Q9H4L4 U3.8-201ENST00000363675 217 ntBASIC9.86□□□□□ -0.83
SENP3Q9H4L4 MEIS1-202ENST00000398506 3530 ntTSL 5 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 CYP4F29P-201ENST00000420685 446 ntBASIC9.86□□□□□ -0.83
SENP3Q9H4L4 Z98257.1-202ENST00000431027 2493 ntTSL 5 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 CXCR6-204ENST00000458629 2805 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC9.86□□□□□ -0.83
SENP3Q9H4L4 ADGRG7-201ENST00000273352 3140 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 PLCB1-202ENST00000378637 3864 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 LINC02249-202ENST00000562624 4260 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 BTK-210ENST00000621635 2767 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 RNU6-1138P-201ENST00000365359 106 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 RPL35AP21-201ENST00000437667 333 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 AC010099.1-201ENST00000455434 375 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 RN7SL39P-201ENST00000462264 297 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 KC877373.1-201ENST00000479066 408 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 RN7SL57P-201ENST00000493687 290 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 OR9P1P-201ENST00000496431 281 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 SNORA31.23-201ENST00000517219 133 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 AC027176.1-201ENST00000560204 514 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 AC010325.3-201ENST00000641084 394 ntBASIC9.85□□□□□ -0.83
SENP3Q9H4L4 ERBB4-202ENST00000342788 12136 ntAPPRIS P3 TSL 1 (best) BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 CLTC-210ENST00000579456 2301 ntTSL 5 BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 HIPK1-211ENST00000626993 8016 ntTSL 5 BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC9.85□□□□□ -0.83
SENP3Q9H4L4 LNPEP-202ENST00000395770 3888 ntTSL 1 (best) BASIC9.85□□□□□ -0.83
Retrieved 100 of 98,524 protein–RNA pairs in 107.6 ms