Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC087752.4-201ENST00000605911 462 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC083798.2-205ENST00000608015 575 ntTSL 5 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC103591.3-201ENST00000608684 209 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC138749.5-201ENST00000611461 208 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AL450472.3-201ENST00000615578 367 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC116165.2-201ENST00000616705 206 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC009159.1-201ENST00000618386 642 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC099654.13-201ENST00000639774 207 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AP000553.6-201ENST00000641242 118 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 AL732372.2-225ENST00000642124 456 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AC004925.1-201ENST00000624256 2706 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
NKX3-1Q99801 DAOA-201ENST00000329625 1433 ntAPPRIS ALT2 TSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
NKX3-1Q99801 AF127577.6-201ENST00000623352 2191 ntBASIC3.1□□□□□ -1.91
NKX3-1Q99801 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 RNU4-24P-201ENST00000364565 139 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 TCEAL7-202ENST00000372666 852 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 C6orf62-201ENST00000378102 741 ntTSL 5 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 RNU6-882P-201ENST00000391025 103 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 SNORD115.1-201ENST00000391109 76 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 RN7SKP285-201ENST00000410137 318 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 Y_RNA.598-201ENST00000410480 95 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 RPS15AP6-201ENST00000420703 385 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 SETP5-201ENST00000437270 562 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AC007003.1-202ENST00000439318 349 ntTSL 5 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 AL591721.1-201ENST00000439849 751 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 AL049734.2-201ENST00000441066 616 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AC099342.1-201ENST00000446399 1124 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 VN1R34P-201ENST00000447387 883 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AL592447.1-201ENST00000447592 540 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 RPL23AP62-201ENST00000463396 453 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 KLHL6-AS1-201ENST00000491676 503 ntTSL 2 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 RPL7P23-201ENST00000493874 747 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 UBE2CP3-201ENST00000502715 450 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
NKX3-1Q99801 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 KLHL2P1-201ENST00000508691 521 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 TRMT10BP1-201ENST00000519377 943 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AP006245.1-201ENST00000522549 120 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 AP000907.2-201ENST00000530827 353 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AP000873.5-201ENST00000533906 236 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 FAM60BP-201ENST00000578364 658 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 HMGN1P30-201ENST00000589286 268 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 AC006254.3-201ENST00000603353 884 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
NKX3-1Q99801 AC092140.2-201ENST00000618027 521 ntBASIC3.09□□□□□ -1.91
NKX3-1Q99801 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC3.09□□□□□ -1.91
NKX3-1Q99801 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
NKX3-1Q99801 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
NKX3-1Q99801 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.09□□□□□ -1.92
NKX3-1Q99801 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
NKX3-1Q99801 TEX21P-201ENST00000447107 1476 ntBASIC3.09□□□□□ -1.92
NKX3-1Q99801 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
NKX3-1Q99801 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.09□□□□□ -1.92
NKX3-1Q99801 AP001350.1-201ENST00000601906 1524 ntBASIC3.09□□□□□ -1.92
NKX3-1Q99801 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AL365440.1-201ENST00000436135 2167 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
NKX3-1Q99801 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 SNORA51.2-201ENST00000364595 132 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 RNU4-91P-201ENST00000364778 135 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 RNU6-348P-201ENST00000384386 107 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 MIR19A-201ENST00000384878 82 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 SNORA40.3-201ENST00000390964 122 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 PTMAP5-201ENST00000393073 333 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 RPS3AP24-201ENST00000407896 734 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 HMGN1P14-201ENST00000412459 517 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 AL591419.1-201ENST00000427423 339 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 RPL21P112-201ENST00000434403 463 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 PGBD4P3-201ENST00000440731 581 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 RPL17P49-201ENST00000443728 411 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC3.08□□□□□ -1.92
NKX3-1Q99801 MTCO3P7-201ENST00000510008 774 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 SNORA67.7-201ENST00000516664 135 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 RN7SKP289-201ENST00000517244 295 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC022616.6-201ENST00000520479 119 ntBASIC3.08□□□□□ -1.92
NKX3-1Q99801 AC107934.1-201ENST00000522215 217 ntBASIC3.08□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 113.4 ms