Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 HMGN1P11-201ENST00000508668 303 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC103855.1-201ENST00000525926 564 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC023442.1-201ENST00000531247 422 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AP004607.2-201ENST00000533949 322 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 RN7SL356P-201ENST00000582228 248 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC007448.1-201ENST00000582714 234 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC004805.2-201ENST00000605382 482 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 MIR6768-201ENST00000610734 72 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AL591516.1-201ENST00000611326 274 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC109309.2-201ENST00000612597 332 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AL162373.1-201ENST00000620433 407 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 MIR8080-201ENST00000622224 89 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 TMEM71-201ENST00000356838 1993 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC004817.4-201ENST00000602396 3625 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 SMG1P4-204ENST00000523028 4131 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AL121839.2-201ENST00000565058 6943 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 OR2H1-202ENST00000377133 3021 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AGBL2-201ENST00000357610 3295 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 CDK1-209ENST00000614696 1884 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 SNORA73.1-201ENST00000363107 205 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 RNA5SP242-201ENST00000364171 118 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 RNU6-741P-201ENST00000383889 107 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 MIR493-201ENST00000385254 89 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 RNU2-68P-201ENST00000410878 191 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 GPS2P1-201ENST00000411761 986 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AL096701.2-201ENST00000416920 238 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AL354766.1-201ENST00000423396 542 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 GAPDHP58-201ENST00000438477 1006 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 NIP7P2-201ENST00000485801 544 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 SNORA31.19-201ENST00000517079 126 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 TRAV32-201ENST00000553993 340 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 SNORD95-201ENST00000579879 68 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC093227.2-201ENST00000589357 285 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC092447.9-201ENST00000603395 144 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC006363.1-201ENST00000603806 463 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AC126915.2-201ENST00000610957 190 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AL132822.1-201ENST00000617063 513 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 LINC02246-205ENST00000627623 417 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 GVINP1-202ENST00000531871 7271 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 METTL18-201ENST00000303469 1426 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 ADAM24P-201ENST00000398655 2101 ntBASIC4.18□□□□□ -1.74
CCDC140Q96MF4 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC140Q96MF4 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 ZBTB8OSP1-201ENST00000342688 498 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.17□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.80-201ENST00000362996 102 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 U3.7-201ENST00000363668 216 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 RNA5SP335-201ENST00000363817 110 ntBASIC4.17□□□□□ -1.74
CCDC140Q96MF4 RNA5SP167-201ENST00000365461 116 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 151.3 ms