Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 RNU6-618P-201ENST00000363518 112 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 MIR34A-201ENST00000385130 110 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AL158823.1-201ENST00000418441 478 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AC244636.1-201ENST00000421152 228 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 SLC44A3-AS1-205ENST00000424505 612 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AL121970.1-201ENST00000447557 929 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 RGS5-217ENST00000451759 835 ntTSL 3 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 SNORD121B-201ENST00000458838 81 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 RN7SL807P-201ENST00000470923 297 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 OR52A4P-202ENST00000481634 799 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 OR52A4P-203ENST00000498233 1014 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 MTCYBP35-201ENST00000503630 1137 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 PCNAP1-201ENST00000505363 709 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 Y_RNA.675-201ENST00000516389 149 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 MIR548Y-201ENST00000582739 110 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 NRBF2P1-201ENST00000587407 859 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 PRR13P7-201ENST00000605538 430 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 SNORA35B-201ENST00000607417 129 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 CR589904.2-201ENST00000612533 440 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AC091812.1-201ENST00000432235 1948 ntBASIC0.99□□□□□ -2.25
LINC00643Q86TS7 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 RNU6-1249P-201ENST00000363237 111 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 RN7SKP158-201ENST00000410453 326 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 UBE2FP1-201ENST00000416536 447 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 RPS3AP44-201ENST00000425466 790 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 UBE2V1P1-201ENST00000430836 445 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC007389.2-201ENST00000434630 306 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC015922.2-201ENST00000435593 184 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AP000949.1-201ENST00000438328 629 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AL714022.1-201ENST00000439897 151 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC009237.8-201ENST00000445492 379 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AL034418.1-201ENST00000448675 860 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC116337.2-201ENST00000477662 156 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC007182.2-201ENST00000489251 402 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 LINC02270-201ENST00000505386 610 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 GNAI2P1-201ENST00000541815 315 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 ITFG1-AS1-202ENST00000565694 494 ntTSL 2 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC068790.3-201ENST00000602988 553 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC098679.5-201ENST00000624394 571 ntBASIC0.98□□□□□ -2.25
LINC00643Q86TS7 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC0.98□□□□□ -2.25
LINC00643Q86TS7 AC073130.1-201ENST00000457033 1958 ntTSL 2 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 RNU6-1243P-201ENST00000364028 107 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 SPINK8-201ENST00000434006 444 ntAPPRIS P1 TSL 3 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AL121601.2-201ENST00000438019 707 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 TRBV25OR9-2-201ENST00000438417 374 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AL117336.1-201ENST00000439198 380 ntTSL 2 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AL133547.1-201ENST00000448546 220 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 RNU7-23P-201ENST00000459465 62 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 MTND4LP3-201ENST00000468320 276 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AC006499.5-201ENST00000505037 514 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AC104108.1-201ENST00000509930 412 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 SCARNA17.1-201ENST00000516211 143 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 SCARNA17.2-201ENST00000516334 143 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 RNU1-103P-201ENST00000516502 125 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 SNORA48.10-201ENST00000516965 160 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AC008745.1-201ENST00000604064 271 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 SCARNA17.4-201ENST00000614296 143 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 MIR7848-201ENST00000617402 101 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AL133370.2-201ENST00000619934 439 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AP002791.1-201ENST00000623291 381 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 NSRP1P1-201ENST00000444067 1693 ntBASIC0.97□□□□□ -2.25
LINC00643Q86TS7 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
LINC00643Q86TS7 SNORA38.1-201ENST00000364172 131 ntBASIC0.96□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms