Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.02□□□□□ -1.61
SF3A1Q15459 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC5.02□□□□□ -1.61
SF3A1Q15459 RNU6-420P-201ENST00000458780 107 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC079804.1-201ENST00000461922 436 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.02□□□□□ -1.61
SF3A1Q15459 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC5.02□□□□□ -1.61
SF3A1Q15459 SCARNA15.2-201ENST00000516409 127 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 RNU6-352P-201ENST00000516908 107 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.02□□□□□ -1.61
SF3A1Q15459 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC5.02□□□□□ -1.61
SF3A1Q15459 IGKV2D-19-201ENST00000523346 262 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC084083.1-201ENST00000526947 722 ntTSL 5 BASIC5.02□□□□□ -1.61
SF3A1Q15459 AP003498.1-201ENST00000532530 347 ntTSL 3 BASIC5.02□□□□□ -1.61
SF3A1Q15459 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC5.02□□□□□ -1.61
SF3A1Q15459 AL109766.1-201ENST00000555080 552 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 RPS3AP4-201ENST00000555161 764 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AL133241.1-201ENST00000556832 487 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC092325.1-201ENST00000566449 554 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC105094.1-201ENST00000588245 316 ntTSL 3 BASIC5.02□□□□□ -1.61
SF3A1Q15459 AC067852.3-201ENST00000589177 561 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC010591.1-201ENST00000603941 649 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC007998.5-201ENST00000622938 237 ntBASIC5.02□□□□□ -1.61
SF3A1Q15459 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC5.02□□□□□ -1.61
SF3A1Q15459 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC5.02□□□□□ -1.61
SF3A1Q15459 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.02□□□□□ -1.61
SF3A1Q15459 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC5.02□□□□□ -1.61
SF3A1Q15459 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SF3A1Q15459 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
SF3A1Q15459 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SF3A1Q15459 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SF3A1Q15459 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SF3A1Q15459 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SF3A1Q15459 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SF3A1Q15459 AC116096.1-201ENST00000566804 2314 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SF3A1Q15459 AC008725.1-201ENST00000605123 2263 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 Y_RNA.256-201ENST00000364594 104 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 SNORA62-201ENST00000365493 153 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 RNU6-190P-201ENST00000384154 102 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SF3A1Q15459 RNU2-37P-201ENST00000410695 177 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 BTF3L4P3-201ENST00000418879 476 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC5.01□□□□□ -1.61
SF3A1Q15459 HMGB1P12-201ENST00000438594 598 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 LINC00366-201ENST00000441430 435 ntTSL 2 BASIC5.01□□□□□ -1.61
SF3A1Q15459 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC5.01□□□□□ -1.61
SF3A1Q15459 AC114755.5-201ENST00000447760 831 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AC073264.2-201ENST00000448886 166 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 TPT1P12-201ENST00000448968 492 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC5.01□□□□□ -1.61
SF3A1Q15459 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.01□□□□□ -1.61
SF3A1Q15459 AL513533.1-201ENST00000453728 415 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 RPL37P6-201ENST00000460682 294 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AC078785.3-201ENST00000476607 425 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 RN7SL812P-201ENST00000493791 279 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AC092673.1-201ENST00000510203 428 ntTSL 3 BASIC5.01□□□□□ -1.61
SF3A1Q15459 RNA5SP503-201ENST00000517047 117 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AC104232.2-201ENST00000519680 769 ntTSL 5 BASIC5.01□□□□□ -1.61
SF3A1Q15459 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC5.01□□□□□ -1.61
SF3A1Q15459 AP006289.1-201ENST00000538089 277 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AL352979.3-201ENST00000553515 247 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AC084783.1-201ENST00000565846 910 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 SNORA59B-202ENST00000578183 701 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AC006504.3-201ENST00000586818 523 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AP001029.3-201ENST00000588063 596 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 MIR7703-201ENST00000620784 77 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC5.01□□□□□ -1.61
SF3A1Q15459 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC5.01□□□□□ -1.61
SF3A1Q15459 AL137003.2-201ENST00000606924 2538 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
SF3A1Q15459 SPATA31D2P-201ENST00000429999 4388 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 AL672296.1-201ENST00000427780 2158 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 MTND5P17-201ENST00000418405 1603 ntBASIC5.01□□□□□ -1.61
SF3A1Q15459 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5□□□□□ -1.61
SF3A1Q15459 RNY4P14-201ENST00000363656 96 ntBASIC5□□□□□ -1.61
SF3A1Q15459 RNA5SP505-201ENST00000364748 108 ntBASIC5□□□□□ -1.61
SF3A1Q15459 Y_RNA.573-201ENST00000384763 105 ntBASIC5□□□□□ -1.61
SF3A1Q15459 RNU6-1158P-201ENST00000391167 107 ntBASIC5□□□□□ -1.61
SF3A1Q15459 HSPE1P26-201ENST00000405341 275 ntBASIC5□□□□□ -1.61
SF3A1Q15459 MIR1277-201ENST00000408536 78 ntBASIC5□□□□□ -1.61
SF3A1Q15459 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
SF3A1Q15459 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
SF3A1Q15459 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC5□□□□□ -1.61
SF3A1Q15459 RPEP3-201ENST00000425462 676 ntBASIC5□□□□□ -1.61
SF3A1Q15459 HLA-N-201ENST00000437516 135 ntBASIC5□□□□□ -1.61
SF3A1Q15459 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC5□□□□□ -1.61
SF3A1Q15459 ABCF2P2-201ENST00000450549 296 ntBASIC5□□□□□ -1.61
SF3A1Q15459 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC5□□□□□ -1.61
SF3A1Q15459 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC5□□□□□ -1.61
SF3A1Q15459 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC5□□□□□ -1.61
SF3A1Q15459 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC5□□□□□ -1.61
SF3A1Q15459 DHFRP3-201ENST00000455595 559 ntBASIC5□□□□□ -1.61
SF3A1Q15459 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC5□□□□□ -1.61
SF3A1Q15459 RN7SL385P-201ENST00000468873 276 ntBASIC5□□□□□ -1.61
SF3A1Q15459 RPL21P126-201ENST00000470049 478 ntBASIC5□□□□□ -1.61
SF3A1Q15459 AC083798.1-201ENST00000472671 131 ntBASIC5□□□□□ -1.61
SF3A1Q15459 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC5□□□□□ -1.61
SF3A1Q15459 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC5□□□□□ -1.61
SF3A1Q15459 MTND1P35-201ENST00000526739 508 ntBASIC5□□□□□ -1.61
SF3A1Q15459 AC103843.2-201ENST00000530523 682 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms