Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC090115.3-201ENST00000553218 849 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AC068446.3-201ENST00000555285 382 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC5.1□□□□□ -1.59
LIG3P49916 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC5.1□□□□□ -1.59
LIG3P49916 MIR3941-201ENST00000582572 103 ntBASIC5.1□□□□□ -1.59
LIG3P49916 MIR4691-201ENST00000583764 85 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.1□□□□□ -1.59
LIG3P49916 AC006116.10-201ENST00000591836 581 ntBASIC5.1□□□□□ -1.59
LIG3P49916 ATP1B3P1-201ENST00000605365 821 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC5.1□□□□□ -1.59
LIG3P49916 AC091979.2-201ENST00000607514 214 ntBASIC5.1□□□□□ -1.59
LIG3P49916 RNU6ATAC35P-201ENST00000609276 444 ntBASIC5.1□□□□□ -1.59
LIG3P49916 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC5.1□□□□□ -1.59
LIG3P49916 AL591926.8-201ENST00000616876 211 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AC005086.4-201ENST00000623065 213 ntBASIC5.1□□□□□ -1.59
LIG3P49916 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC5.1□□□□□ -1.59
LIG3P49916 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
LIG3P49916 IRF5P1-201ENST00000504852 2164 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AL050331.3-201ENST00000448740 2081 ntTSL 2 BASIC5.09□□□□□ -1.59
LIG3P49916 ASNSP1-201ENST00000518311 1939 ntBASIC5.09□□□□□ -1.59
LIG3P49916 MTND5P10-201ENST00000603719 1809 ntBASIC5.09□□□□□ -1.59
LIG3P49916 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
LIG3P49916 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
LIG3P49916 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 RNA5SP123-201ENST00000363244 119 ntBASIC5.09□□□□□ -1.59
LIG3P49916 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
LIG3P49916 Y_RNA.399-201ENST00000383955 105 ntBASIC5.09□□□□□ -1.59
LIG3P49916 RNU6-393P-201ENST00000384475 107 ntBASIC5.09□□□□□ -1.59
LIG3P49916 RNU6-601P-201ENST00000384540 107 ntBASIC5.09□□□□□ -1.59
LIG3P49916 MIR195-201ENST00000385194 87 ntBASIC5.09□□□□□ -1.59
LIG3P49916 MIR450B-201ENST00000401182 78 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AL109941.1-201ENST00000401925 229 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AL121834.1-202ENST00000404494 277 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AL139397.2-201ENST00000404529 772 ntBASIC5.09□□□□□ -1.59
LIG3P49916 RNU6-954P-201ENST00000411355 107 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 AC009237.10-201ENST00000414112 510 ntBASIC5.09□□□□□ -1.59
LIG3P49916 SSXP9-201ENST00000417503 292 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.09□□□□□ -1.59
LIG3P49916 AC009238.2-201ENST00000431026 355 ntBASIC5.09□□□□□ -1.59
LIG3P49916 SNAP23P1-201ENST00000433229 246 ntBASIC5.09□□□□□ -1.59
LIG3P49916 RHOT1P3-201ENST00000436571 331 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.09□□□□□ -1.59
LIG3P49916 AP002812.1-201ENST00000495378 474 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AC008526.1-201ENST00000509149 338 ntBASIC5.09□□□□□ -1.59
LIG3P49916 COX6B1P5-201ENST00000509843 249 ntBASIC5.09□□□□□ -1.59
LIG3P49916 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 RNU6-352P-201ENST00000516908 107 ntBASIC5.09□□□□□ -1.59
LIG3P49916 RNU6-677P-201ENST00000516914 101 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AP006587.4-201ENST00000526053 529 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AP000676.2-201ENST00000529711 301 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AC018630.1-201ENST00000541376 925 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.09□□□□□ -1.59
LIG3P49916 AC126177.3-201ENST00000551839 688 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC5.09□□□□□ -1.59
LIG3P49916 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 AC105254.2-201ENST00000603636 436 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AC104763.2-201ENST00000604179 382 ntBASIC5.09□□□□□ -1.59
LIG3P49916 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 AC019193.3-201ENST00000609144 554 ntBASIC5.09□□□□□ -1.59
LIG3P49916 AC004696.1-201ENST00000614345 607 ntBASIC5.09□□□□□ -1.59
LIG3P49916 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 ORC3-201ENST00000257789 2501 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
LIG3P49916 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.09□□□□□ -1.59
LIG3P49916 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
LIG3P49916 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC5.09□□□□□ -1.6
LIG3P49916 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC5.09□□□□□ -1.6
LIG3P49916 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
LIG3P49916 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC5.08□□□□□ -1.6
LIG3P49916 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.08□□□□□ -1.6
LIG3P49916 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIG3P49916 SNORA22B-201ENST00000383876 138 ntBASIC5.08□□□□□ -1.6
LIG3P49916 RNU6-434P-201ENST00000384376 107 ntBASIC5.08□□□□□ -1.6
LIG3P49916 SNORA66-201ENST00000384792 133 ntBASIC5.08□□□□□ -1.6
LIG3P49916 SNORA16.2-201ENST00000390991 127 ntBASIC5.08□□□□□ -1.6
LIG3P49916 HDGFP1-201ENST00000405943 252 ntBASIC5.08□□□□□ -1.6
LIG3P49916 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC5.08□□□□□ -1.6
LIG3P49916 RPLP0P7-201ENST00000416050 667 ntBASIC5.08□□□□□ -1.6
LIG3P49916 PPP1R11P2-201ENST00000423543 382 ntBASIC5.08□□□□□ -1.6
LIG3P49916 FAR2P4-202ENST00000425399 584 ntBASIC5.08□□□□□ -1.6
LIG3P49916 SKA2P1-201ENST00000425592 390 ntBASIC5.08□□□□□ -1.6
LIG3P49916 C21orf91-OT1-202ENST00000430815 717 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG3P49916 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC5.08□□□□□ -1.6
LIG3P49916 AC007557.1-201ENST00000451711 541 ntTSL 2 BASIC5.08□□□□□ -1.6
LIG3P49916 HMGB3P22-202ENST00000451823 572 ntBASIC5.08□□□□□ -1.6
LIG3P49916 ELOCP24-201ENST00000456370 334 ntBASIC5.08□□□□□ -1.6
LIG3P49916 RPL30P15-201ENST00000457129 321 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC5.08□□□□□ -1.6
LIG3P49916 RNU7-167P-201ENST00000459160 62 ntBASIC5.08□□□□□ -1.6
LIG3P49916 RPL21P103-201ENST00000479921 488 ntBASIC5.08□□□□□ -1.6
LIG3P49916 RN7SL817P-201ENST00000480777 288 ntBASIC5.08□□□□□ -1.6
LIG3P49916 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC5.08□□□□□ -1.6
LIG3P49916 AC025164.1-201ENST00000496249 478 ntBASIC5.08□□□□□ -1.6
LIG3P49916 GYPB-202ENST00000502664 521 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LIG3P49916 AC079140.5-201ENST00000507882 310 ntBASIC5.08□□□□□ -1.6
LIG3P49916 MTCYBP40-201ENST00000509390 1135 ntBASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91.7 ms