Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 HMGB1P50-201ENST00000605814 607 ntBASIC3.55□□□□□ -1.84
LDB3O75112 SNORA62.6-201ENST00000606322 83 ntBASIC3.55□□□□□ -1.84
LDB3O75112 AL592295.2-201ENST00000612578 206 ntBASIC3.55□□□□□ -1.84
LDB3O75112 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC3.55□□□□□ -1.84
LDB3O75112 AC108479.2-201ENST00000617314 601 ntBASIC3.55□□□□□ -1.84
LDB3O75112 CR381572.1-201ENST00000625098 102 ntBASIC3.55□□□□□ -1.84
LDB3O75112 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.55□□□□□ -1.84
LDB3O75112 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LDB3O75112 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LDB3O75112 SCEL-201ENST00000349847 2386 ntAPPRIS P4 TSL 1 (best) BASIC3.55□□□□□ -1.84
LDB3O75112 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
LDB3O75112 AC024560.2-201ENST00000507981 1497 ntBASIC3.54□□□□□ -1.84
LDB3O75112 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
LDB3O75112 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.54□□□□□ -1.84
LDB3O75112 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
LDB3O75112 AC006504.1-201ENST00000562493 3666 ntBASIC3.54□□□□□ -1.84
LDB3O75112 RNU6-534P-201ENST00000364877 106 ntBASIC3.54□□□□□ -1.84
LDB3O75112 RNU1-64P-201ENST00000365443 163 ntBASIC3.54□□□□□ -1.84
LDB3O75112 RNA5SP167-201ENST00000365461 116 ntBASIC3.54□□□□□ -1.84
LDB3O75112 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
LDB3O75112 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
LDB3O75112 RNU6-876P-201ENST00000391295 104 ntBASIC3.54□□□□□ -1.84
LDB3O75112 U3.29-201ENST00000391296 212 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AL356421.1-201ENST00000403255 413 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.54□□□□□ -1.84
LDB3O75112 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LDB3O75112 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC3.54□□□□□ -1.84
LDB3O75112 RPL17P36-201ENST00000420302 549 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AL139413.1-201ENST00000421309 217 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.54□□□□□ -1.84
LDB3O75112 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LDB3O75112 AL589872.1-201ENST00000426602 288 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC3.54□□□□□ -1.84
LDB3O75112 ISCA1P6-201ENST00000427740 390 ntBASIC3.54□□□□□ -1.84
LDB3O75112 EZH2P1-201ENST00000431167 291 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AC098614.3-201ENST00000438957 440 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AC112653.1-201ENST00000443851 386 ntBASIC3.54□□□□□ -1.84
LDB3O75112 MTCO3P20-201ENST00000454926 688 ntBASIC3.54□□□□□ -1.84
LDB3O75112 snoU13.8-201ENST00000458890 104 ntBASIC3.54□□□□□ -1.84
LDB3O75112 CREM-226ENST00000469949 721 ntTSL 3 BASIC3.54□□□□□ -1.84
LDB3O75112 MTND1P3-201ENST00000484956 952 ntBASIC3.54□□□□□ -1.84
LDB3O75112 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC3.54□□□□□ -1.84
LDB3O75112 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.54□□□□□ -1.84
LDB3O75112 AC112204.1-201ENST00000502591 103 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC3.54□□□□□ -1.84
LDB3O75112 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.54□□□□□ -1.84
LDB3O75112 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC3.54□□□□□ -1.84
LDB3O75112 RNU6-1003P-201ENST00000517099 105 ntBASIC3.54□□□□□ -1.84
LDB3O75112 SUMO2P20-201ENST00000520803 283 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.54□□□□□ -1.84
LDB3O75112 C11orf1-204ENST00000530214 599 ntTSL 5 BASIC3.54□□□□□ -1.84
LDB3O75112 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.54□□□□□ -1.84
LDB3O75112 AC135001.1-201ENST00000544546 283 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AC107016.1-201ENST00000550463 337 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AL355097.1-201ENST00000555889 539 ntTSL 4 BASIC3.54□□□□□ -1.84
LDB3O75112 BNIP3P5-201ENST00000562290 498 ntBASIC3.54□□□□□ -1.84
LDB3O75112 BNIP3P9-201ENST00000603714 553 ntBASIC3.54□□□□□ -1.84
LDB3O75112 BRDTP1-201ENST00000605735 677 ntBASIC3.54□□□□□ -1.84
LDB3O75112 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC3.54□□□□□ -1.84
LDB3O75112 AC091905.1-201ENST00000624400 311 ntBASIC3.54□□□□□ -1.84
LDB3O75112 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LDB3O75112 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.54□□□□□ -1.84
LDB3O75112 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.54□□□□□ -1.84
LDB3O75112 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
LDB3O75112 CCT4P2-201ENST00000233836 1548 ntBASIC3.54□□□□□ -1.84
LDB3O75112 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LDB3O75112 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.53□□□□□ -1.84
LDB3O75112 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
LDB3O75112 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
LDB3O75112 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.53□□□□□ -1.84
LDB3O75112 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
LDB3O75112 RNA5SP258-201ENST00000362750 119 ntBASIC3.53□□□□□ -1.84
LDB3O75112 RNU6-989P-201ENST00000362756 107 ntBASIC3.53□□□□□ -1.84
LDB3O75112 Y_RNA.61-201ENST00000362835 102 ntBASIC3.53□□□□□ -1.84
LDB3O75112 RNU6-335P-201ENST00000364563 113 ntBASIC3.53□□□□□ -1.84
LDB3O75112 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
LDB3O75112 SOD2P1-201ENST00000396543 562 ntBASIC3.53□□□□□ -1.84
LDB3O75112 AL590704.1-201ENST00000402856 794 ntBASIC3.53□□□□□ -1.84
LDB3O75112 RNU4-55P-201ENST00000410731 137 ntBASIC3.53□□□□□ -1.84
LDB3O75112 RNU2-41P-201ENST00000410991 178 ntBASIC3.53□□□□□ -1.84
LDB3O75112 SNORA57.3-201ENST00000411095 141 ntBASIC3.53□□□□□ -1.84
LDB3O75112 CYCSP19-201ENST00000411715 316 ntBASIC3.53□□□□□ -1.84
LDB3O75112 EI24P1-201ENST00000416584 867 ntBASIC3.53□□□□□ -1.84
LDB3O75112 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC3.53□□□□□ -1.84
LDB3O75112 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.53□□□□□ -1.84
LDB3O75112 MRPS18BP2-201ENST00000434310 759 ntBASIC3.53□□□□□ -1.84
LDB3O75112 FAM103A2P-201ENST00000444122 354 ntBASIC3.53□□□□□ -1.84
LDB3O75112 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC3.53□□□□□ -1.84
LDB3O75112 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC3.53□□□□□ -1.84
LDB3O75112 UBDP1-202ENST00000457888 382 ntBASIC3.53□□□□□ -1.84
LDB3O75112 RPS4XP10-201ENST00000465034 731 ntBASIC3.53□□□□□ -1.84
LDB3O75112 COX7A2P2-201ENST00000505291 250 ntBASIC3.53□□□□□ -1.84
LDB3O75112 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC3.53□□□□□ -1.84
LDB3O75112 RNU6-875P-201ENST00000516488 106 ntBASIC3.53□□□□□ -1.84
LDB3O75112 AP001893.2-201ENST00000526949 202 ntBASIC3.53□□□□□ -1.84
LDB3O75112 AP003181.2-201ENST00000528941 181 ntBASIC3.53□□□□□ -1.84
LDB3O75112 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
LDB3O75112 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC3.53□□□□□ -1.84
LDB3O75112 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC3.53□□□□□ -1.84
LDB3O75112 SLC12A1-210ENST00000561031 735 ntTSL 2 BASIC3.53□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms